Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   JH258_RS15920 Genome accession   NZ_CP066983
Coordinates   3601307..3602701 (+) Length   464 a.a.
NCBI ID   WP_042594919.1    Uniprot ID   A0AAJ3CC33
Organism   Xanthomonas campestris pv. campestris strain 27-6     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3596307..3607701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH258_RS15895 (JH258_15815) - 3596364..3596666 (-) 303 WP_011038207.1 type II toxin-antitoxin system RelE/ParE family toxin -
  JH258_RS15900 (JH258_15820) - 3596670..3597080 (-) 411 WP_319608033.1 DNA-binding protein -
  JH258_RS15905 (JH258_15825) sucD 3597184..3598059 (-) 876 WP_274498718.1 succinate--CoA ligase subunit alpha -
  JH258_RS15910 (JH258_15830) sucC 3598084..3599253 (-) 1170 WP_011038209.1 ADP-forming succinate--CoA ligase subunit beta -
  JH258_RS15915 (JH258_15835) - 3599487..3601097 (+) 1611 WP_040940804.1 HAMP domain-containing sensor histidine kinase -
  JH258_RS15920 (JH258_15840) pilR 3601307..3602701 (+) 1395 WP_042594919.1 sigma-54 dependent transcriptional regulator Regulator
  JH258_RS15925 (JH258_15845) pilB 3603119..3604852 (-) 1734 WP_227971327.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JH258_RS15930 (JH258_15850) - 3604892..3605302 (-) 411 WP_274316877.1 pilin -
  JH258_RS15935 (JH258_15855) - 3605391..3605807 (-) 417 WP_227971328.1 pilin -
  JH258_RS15940 (JH258_15860) pilC 3606233..3607435 (+) 1203 WP_227971345.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50293.69 Da        Isoelectric Point: 6.5131

>NTDB_id=523864 JH258_RS15920 WP_042594919.1 3601307..3602701(+) (pilR) [Xanthomonas campestris pv. campestris strain 27-6]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALNQYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAASPGTAA
VEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=523864 JH258_RS15920 WP_042594919.1 3601307..3602701(+) (pilR) [Xanthomonas campestris pv. campestris strain 27-6]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CGGACATGCGGTTGCCCGACGGCAACGGCATCGAACTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATTACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCACCCC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTTGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCCGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAACCGGGTCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCAGTGCGCCCGGTCGGCGC
CTCGGGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACACACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAGCTGCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGCCTGGCCCGCAGCCATGGCCGCCCGATTCCCTTGCTCACCCAGTCCGCACTCGA
TGCCCTGAACCAATACGGCTTCCCCGGCAACGTGCGCGAGCTGGAAAACATCCTGGAACGTGCGCTTGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCATGGCGGCCACCGCCTTGCCGCCAGCCCGGGCACTGCTGCG
GTTGAACCGCGCGAAGCGGTGGTCGACATCGACCCTGCCTCCTCTGCCCTGCCCTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCCCAGCTAGGCATCACGTTTCGTGCGT
TGCGCTACAAGCTGAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491