Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JH306_RS05580 Genome accession   NZ_CP066945
Coordinates   1319713..1320972 (-) Length   419 a.a.
NCBI ID   WP_116670567.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris strain 08284     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1314713..1325972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH306_RS05550 (JH306_05525) - 1314943..1316277 (+) 1335 WP_057671653.1 HAMP domain-containing sensor histidine kinase -
  JH306_RS05555 (JH306_05530) - 1316420..1316911 (-) 492 WP_011038220.1 GNAT family N-acetyltransferase -
  JH306_RS05560 (JH306_05535) - 1316908..1317198 (-) 291 WP_011038219.1 DUF1778 domain-containing protein -
  JH306_RS05565 (JH306_05540) - 1317273..1317674 (-) 402 WP_040940795.1 SymE family type I addiction module toxin -
  JH306_RS05570 (JH306_05545) coaE 1318206..1318829 (-) 624 WP_116670565.1 dephospho-CoA kinase -
  JH306_RS05575 (JH306_05550) - 1318843..1319706 (-) 864 WP_116670566.1 A24 family peptidase -
  JH306_RS05580 (JH306_05555) pilC 1319713..1320972 (-) 1260 WP_116670567.1 type II secretion system F family protein Machinery gene
  JH306_RS05585 (JH306_05560) pilA2 1321326..1321745 (+) 420 WP_116670568.1 pilin Machinery gene
  JH306_RS05590 (JH306_05565) pilB 1321988..1323694 (+) 1707 WP_274376735.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JH306_RS05595 (JH306_05570) - 1323924..1325291 (-) 1368 WP_011035783.1 IS5-like element IS1478 family transposase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46030.52 Da        Isoelectric Point: 10.2875

>NTDB_id=523461 JH306_RS05580 WP_116670567.1 1319713..1320972(-) (pilC) [Xanthomonas campestris pv. campestris strain 08284]
MSVARSAIKKQPIDRNTSLLQTFVWEGADKRGVKMKGEQTARNANMLRAELRRQGIVPSMVKQKPKPLFGAAGKKITAKD
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQVRTDIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKAMFYPAMVVAVAIVVSAILLIFVVPQFEEVFKNFGAELPAFTQLLVNASRFMVSYWWL
MLMVTVGSIVGFIFAYKRSPRMQHALDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVVQMTAIGEEAGALDTMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=523461 JH306_RS05580 WP_116670567.1 1319713..1320972(-) (pilC) [Xanthomonas campestris pv. campestris strain 08284]
ATGTCAGTCGCGCGTAGCGCCATCAAGAAGCAACCGATCGACCGGAACACCAGCCTGCTGCAGACCTTCGTTTGGGAAGG
AGCTGACAAGCGTGGCGTGAAGATGAAGGGAGAGCAGACAGCCCGCAACGCCAATATGTTGCGAGCAGAGCTGCGCCGTC
AGGGCATCGTGCCCAGCATGGTGAAGCAAAAGCCGAAGCCGCTGTTCGGAGCGGCGGGCAAGAAAATTACCGCCAAAGAC
ATTGCGTTCTTTAGCCGTCAGATGGCGACGATGATGAAGTCAGGCGTGCCCATCGTCAGTTCTCTGGAGATCATCGGCGA
GGGACACAAGAACCCACGCATGAAGAAGATGGTCGGCCAGGTCAGGACTGACATTGAGGGGGGATCCTCGCTCTACGAGT
CCATCAGCAAACATCCCGTCCAGTTTGACGAGCTCTACCGCAATCTTGTCCGCGCGGGCGAAGGTGCCGGCGTACTGGAG
ACAGTCCTAGATACGGTCGCAACGTACAAAGAGAACATTGAAGCCCTCAAGGGCAAGATCAAAAAGGCAATGTTCTACCC
TGCCATGGTGGTTGCCGTGGCAATCGTTGTAAGTGCGATTTTGCTTATCTTCGTGGTACCTCAGTTCGAAGAGGTATTCA
AGAATTTCGGCGCTGAACTACCGGCATTCACTCAGCTGCTCGTCAATGCCTCGCGCTTTATGGTCAGCTATTGGTGGTTG
ATGCTGATGGTGACAGTTGGATCTATCGTTGGCTTCATCTTTGCCTACAAACGTTCTCCACGGATGCAGCATGCACTTGA
CCGGTTGATCCTCAAGGTCCCAGTGATTGGGCAGATCATGCACAACAGCGCAATTGCACGTTTTGCACGCACTACTGCCG
TAACGTTCAAGGCAGGCGTACCTCTCGTCGAGGCACTTGGGATCGTTGCAGGTGCCACCGGCAACAAGGTCTACGAAGAG
GCCGTACTGCGGATGCGCGACGACGTATCGGTCGGCTATCCGGTGAACATGGCGATGAAACAAGTGAATCTGTTTCCGCA
CATGGTGGTGCAGATGACCGCAATCGGCGAGGAAGCAGGCGCCTTGGATACCATGTTATTCAAGGTGGCCGAGTACTTCG
AGCAGGAAGTTAACAACGCCGTGGACGCGCTCAGCAGCCTGCTTGAACCACTGATCATGGTGTTCATCGGCACCATCGTA
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.293

94.511

0.513
  pilC Legionella pneumophila strain ERS1305867

52.463

96.897

0.508
  pilC Acinetobacter baylyi ADP1

51.358

96.659

0.496
  pilC Acinetobacter baumannii D1279779

50.123

96.659

0.484
  pilG Neisseria gonorrhoeae MS11

43.609

95.227

0.415
  pilG Neisseria meningitidis 44/76-A

43.108

95.227

0.411
  pilC Vibrio cholerae strain A1552

40.25

95.465

0.384
  pilC Vibrio campbellii strain DS40M4

39

95.465

0.372
  pilC Thermus thermophilus HB27

38.75

95.465

0.37