Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   JGZ50_RS05960 Genome accession   NZ_CP066713
Coordinates   1258718..1259692 (+) Length   324 a.a.
NCBI ID   WP_014613820.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain DSP026     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1253718..1264692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGZ50_RS05925 (JGZ50_05925) rpmG 1254105..1254269 (+) 165 WP_256726578.1 50S ribosomal protein L33 -
  JGZ50_RS12660 - 1254419..1254664 (+) 246 WP_320205513.1 5-formyltetrahydrofolate cyclo-ligase -
  JGZ50_RS12665 - 1254664..1254957 (+) 294 WP_320205514.1 5-formyltetrahydrofolate cyclo-ligase -
  JGZ50_RS05935 (JGZ50_05935) - 1254976..1256415 (+) 1440 WP_014613815.1 rhomboid family intramembrane serine protease -
  JGZ50_RS05940 (JGZ50_05940) - 1256417..1256620 (+) 204 WP_014613816.1 YqgQ family protein -
  JGZ50_RS05945 (JGZ50_05945) - 1256617..1257603 (+) 987 WP_014613817.1 ROK family glucokinase -
  JGZ50_RS05950 (JGZ50_05950) - 1257604..1257915 (+) 312 WP_014613818.1 MTH1187 family thiamine-binding protein -
  JGZ50_RS05955 (JGZ50_05955) - 1257928..1258557 (+) 630 WP_037542865.1 MBL fold metallo-hydrolase -
  JGZ50_RS05960 (JGZ50_05960) comGA 1258718..1259692 (+) 975 WP_014613820.1 competence type IV pilus ATPase ComGA Machinery gene
  JGZ50_RS05965 (JGZ50_05965) comGB 1259661..1260728 (+) 1068 WP_014613821.1 competence type IV pilus assembly protein ComGB -
  JGZ50_RS05970 (JGZ50_05970) comGC 1260741..1261064 (+) 324 WP_015729165.1 competence type IV pilus major pilin ComGC Machinery gene
  JGZ50_RS05975 (JGZ50_05975) comGD 1261042..1261482 (+) 441 WP_014613823.1 competence type IV pilus minor pilin ComGD -
  JGZ50_RS05980 (JGZ50_05980) - 1261587..1261787 (+) 201 WP_020219623.1 hypothetical protein -
  JGZ50_RS05985 (JGZ50_05985) - 1261693..1262178 (+) 486 WP_080552896.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  JGZ50_RS05990 (JGZ50_05990) - 1262342..1262869 (+) 528 WP_014613826.1 shikimate kinase -
  JGZ50_RS05995 (JGZ50_05995) gcvT 1263027..1264118 (+) 1092 WP_015729161.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36846.58 Da        Isoelectric Point: 7.5584

>NTDB_id=521932 JGZ50_RS05960 WP_014613820.1 1258718..1259692(+) (comGA) [Staphylococcus pseudintermedius strain DSP026]
MQLLLDHVIQFALQNEASDIHFIPSQSQVEVKLRVKDQLVLYDTLNLETYQKLLTLLKYQAGLDISTRHKAQSGRYIYEH
KALYYLRVSTLPLNLGTESCVIRITPQYFQNAKAHSVLDIKSNMEKKQGLILFSGPTGAGKSTLMYQMVVYAKQKLNLNI
ITIEDPVEQLVNGITQISVNEKADITYGSSLKAILRCDPDVILIGEIRDSHIARDVIQASLSGHLVLSTIHANDCQGVLL
RLIEMGLSHQDLSQSINLIINQRLITTKNDQRQLVYETMDQQEIHYFLNNNFQLPTAFTSLSHKLQLLNKEGVIDEKILR
KYTI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=521932 JGZ50_RS05960 WP_014613820.1 1258718..1259692(+) (comGA) [Staphylococcus pseudintermedius strain DSP026]
ATGCAACTACTATTAGATCATGTAATACAATTTGCACTTCAAAATGAGGCATCAGACATTCATTTTATCCCATCACAATC
ACAAGTCGAAGTGAAACTCAGAGTGAAAGATCAACTTGTATTATATGACACATTAAATCTAGAAACGTATCAAAAATTGT
TAACTTTGTTGAAATACCAAGCTGGATTAGATATTTCGACACGCCACAAAGCGCAAAGTGGGCGCTATATTTATGAACAT
AAAGCGTTATATTATTTAAGAGTGTCCACGTTACCTTTAAACTTAGGTACTGAAAGTTGTGTTATTCGTATTACACCCCA
ATATTTTCAAAATGCGAAAGCTCATAGTGTATTAGACATCAAATCTAATATGGAGAAAAAGCAAGGTTTAATTCTGTTTA
GCGGGCCTACAGGTGCAGGAAAGAGCACGTTAATGTATCAAATGGTCGTCTATGCTAAACAAAAGTTAAACCTGAATATT
ATCACAATAGAAGACCCGGTCGAGCAGCTTGTGAACGGCATTACGCAAATTTCCGTTAACGAAAAAGCTGATATTACGTA
TGGATCGTCGTTAAAAGCAATTCTTCGTTGTGATCCAGATGTCATCTTAATTGGTGAGATTCGTGACAGTCATATTGCAA
GGGACGTTATACAAGCGAGTTTAAGTGGGCATTTAGTATTGTCGACGATACACGCCAATGATTGTCAAGGGGTGCTCCTT
AGACTGATTGAAATGGGACTCTCTCACCAAGATTTATCTCAATCTATCAATCTCATCATCAATCAAAGACTCATTACAAC
AAAAAACGACCAGCGACAACTCGTCTATGAAACGATGGATCAACAGGAGATTCATTACTTTTTGAATAATAACTTCCAAC
TACCTACTGCTTTCACAAGCCTTTCTCATAAGCTTCAACTTCTGAATAAAGAGGGGGTTATAGATGAAAAGATTTTACGA
AAGTATACGATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

58.514

99.691

0.583
  comGA Staphylococcus aureus N315

58.514

99.691

0.583