Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   JFT18_RS05510 Genome accession   NZ_CP066547
Coordinates   1179023..1180285 (+) Length   420 a.a.
NCBI ID   WP_063485052.1    Uniprot ID   -
Organism   Lactiplantibacillus plantarum strain SHY 21-2     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1174023..1185285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFT18_RS05490 (JFT18_05550) - 1174605..1175870 (+) 1266 WP_198988068.1 pitrilysin family protein -
  JFT18_RS05495 (JFT18_05555) - 1175867..1177168 (+) 1302 WP_003644640.1 pitrilysin family protein -
  JFT18_RS05500 (JFT18_05560) - 1177272..1178144 (+) 873 WP_003641501.1 RodZ domain-containing protein -
  JFT18_RS05505 (JFT18_05565) pgsA 1178167..1178751 (+) 585 WP_003641502.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JFT18_RS05510 (JFT18_05570) cinA 1179023..1180285 (+) 1263 WP_063485052.1 competence/damage-inducible protein A Machinery gene
  JFT18_RS05515 (JFT18_05575) recA 1180377..1181519 (+) 1143 WP_003641504.1 recombinase RecA Machinery gene
  JFT18_RS05520 (JFT18_05580) rny 1181750..1183309 (+) 1560 WP_003644638.1 ribonuclease Y -
  JFT18_RS05525 (JFT18_05585) - 1183434..1184240 (+) 807 WP_003641506.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45135.23 Da        Isoelectric Point: 5.4407

>NTDB_id=520772 JFT18_RS05510 WP_063485052.1 1179023..1180285(+) (cinA) [Lactiplantibacillus plantarum strain SHY 21-2]
MQAEIIAVGTEILLGQITNTNSTYIARGLAELGIDSYYQTVVGDNRQRLSTVIEIAAQRNDLVILTGGLGPTKDDLTKQT
LAHYLNVALVEDQAAMQKITAWFATNDKVMTANNRLQALYPAGAQPLTNHSGMAVGAFYQSENSADFLLLPGPPRELAVM
FDSEAKPKLAAAYGEQAQIYSRVMRFYGISESELATRLQPLIDEQQAVTIAPYAKTNEVTLRLSAQAMTETAARGMIDKV
DHQIKATIGPYFYGYGDDNSLVTTVINQMIAAKLSITAAESLTAGLFQSTIGSVSGVSAIFPGGFVTYANEAKHQLVNVP
QAIIDAEGVVSEATAKAMASGAKQQLNTDVGISFTGVAGPGTLEGQPAGTVWIGLAYRDRPVKAKQYHFAGNRQQIRERS
VMAGLDLLRHALNEDTDLKK

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=520772 JFT18_RS05510 WP_063485052.1 1179023..1180285(+) (cinA) [Lactiplantibacillus plantarum strain SHY 21-2]
ATGCAAGCAGAAATAATCGCGGTTGGTACCGAGATTTTACTGGGTCAGATTACGAACACGAATAGTACGTACATCGCACG
TGGATTGGCCGAATTAGGAATTGATAGCTATTATCAAACGGTGGTTGGTGATAATCGGCAACGTTTGTCGACCGTCATTG
AAATTGCGGCCCAGCGGAATGACTTAGTTATTTTAACGGGTGGTTTGGGGCCGACCAAGGATGACTTGACGAAGCAGACG
CTCGCGCATTATTTGAATGTTGCCTTGGTTGAAGATCAGGCAGCAATGCAAAAAATTACGGCCTGGTTTGCCACTAATGA
CAAAGTAATGACGGCCAACAACCGATTACAGGCATTGTATCCGGCAGGCGCGCAACCGTTGACTAATCATAGCGGAATGG
CTGTTGGTGCGTTTTATCAGTCAGAAAATAGTGCTGATTTCTTGTTATTGCCAGGTCCACCCCGTGAGTTAGCCGTAATG
TTTGATTCTGAGGCAAAACCGAAATTGGCAGCTGCATATGGGGAACAAGCCCAAATCTATTCGCGAGTGATGCGTTTTTA
TGGCATCAGTGAGTCTGAATTGGCGACCCGGTTGCAACCCTTGATTGATGAACAGCAGGCGGTTACGATTGCACCCTATG
CCAAGACTAACGAGGTTACCCTCAGATTAAGTGCCCAAGCTATGACGGAAACGGCTGCAAGGGGAATGATCGACAAAGTT
GACCACCAGATCAAGGCTACCATTGGGCCGTACTTTTACGGTTATGGAGACGATAACTCGTTAGTTACTACTGTTATTAA
TCAAATGATTGCGGCTAAGCTGAGTATTACAGCCGCTGAAAGCTTAACAGCTGGGCTGTTTCAGAGTACCATCGGCAGTG
TGTCCGGGGTCTCCGCAATCTTTCCGGGCGGCTTTGTAACGTATGCGAATGAGGCCAAACATCAGCTAGTGAACGTTCCA
CAAGCAATTATTGACGCTGAGGGCGTGGTTTCAGAAGCGACCGCTAAGGCCATGGCGAGTGGTGCTAAGCAGCAGCTAAA
TACTGATGTTGGTATCAGTTTTACAGGCGTTGCCGGTCCAGGAACCTTGGAAGGTCAACCGGCTGGAACGGTATGGATTG
GTCTTGCTTACCGTGATCGACCCGTGAAGGCCAAGCAGTACCATTTTGCTGGTAATCGACAACAAATTCGGGAACGCAGT
GTGATGGCCGGGTTAGACCTATTGAGACATGCATTGAATGAAGATACGGACTTAAAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(260-411)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

48.349

100

0.488
  cinA Streptococcus pneumoniae TIGR4

48.113

100

0.486
  cinA Streptococcus pneumoniae Rx1

48.113

100

0.486
  cinA Streptococcus pneumoniae R6

48.113

100

0.486
  cinA Streptococcus pneumoniae D39

47.877

100

0.483
  cinA Streptococcus mitis NCTC 12261

47.17

100

0.476
  cinA Streptococcus mutans UA159

47.711

98.81

0.471
  cinA Bacillus subtilis subsp. subtilis str. 168

44.31

98.333

0.436
  cinA Streptococcus suis isolate S10

39.423

99.048

0.39