Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   JF649_RS08490 Genome accession   NZ_CP066541
Coordinates   1726818..1728089 (-) Length   423 a.a.
NCBI ID   WP_129322339.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain MGAS270     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context


Location: 1721818..1733089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JF649_RS08460 (JF649_08445) - 1721818..1723377 (-) 1560 WP_030126183.1 membrane protein -
  JF649_RS08465 (JF649_08450) - 1723789..1724094 (-) 306 WP_002982199.1 DUF1292 domain-containing protein -
  JF649_RS08470 (JF649_08455) ruvX 1724106..1724525 (-) 420 WP_002982196.1 Holliday junction resolvase RuvX -
  JF649_RS08475 (JF649_08460) - 1724522..1724791 (-) 270 WP_002982194.1 IreB family regulatory phosphoprotein -
  JF649_RS08480 (JF649_08465) spx 1724904..1725302 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  JF649_RS08485 (JF649_08470) recA 1725593..1726729 (-) 1137 WP_002992179.1 recombinase RecA Machinery gene
  JF649_RS08490 (JF649_08475) cinA 1726818..1728089 (-) 1272 WP_129322339.1 competence/damage-inducible protein A Machinery gene
  JF649_RS08495 (JF649_08480) - 1728158..1728718 (-) 561 WP_136069689.1 DNA-3-methyladenine glycosylase I -
  JF649_RS08500 (JF649_08485) ruvA 1728728..1729324 (-) 597 WP_011285268.1 Holliday junction branch migration protein RuvA -
  JF649_RS08505 (JF649_08490) - 1729326..1730546 (-) 1221 WP_002991361.1 MFS transporter -
  JF649_RS08510 (JF649_08495) mutL 1730557..1732539 (-) 1983 WP_129322343.1 DNA mismatch repair endonuclease MutL -

Sequence


Protein


Download         Length: 423 a.a.        Molecular weight: 45973.71 Da        Isoelectric Point: 4.9060

>NTDB_id=520712 JF649_RS08490 WP_129322339.1 1726818..1728089(-) (cinA) [Streptococcus pyogenes strain MGAS270]
MKAELIAVGTEILTGQIVNTNAQFLSEKMAELGIDVYFQTAVGDNEERLLSVITTASHRSDLVILCGGLGPTKDDLTKQT
LAKYLRKDLVYDEQACQKLDDFFAKRKPSSRTPNNERQAQVIEGSISLPNKTGLAVGGFITVDGISYVVLPGPPSELKPM
VNEELVPLLSKQYSTLYSKVLRFFGIGESQLVTVLSDFIENQTDPTIAPYAKTGEVTLRLSTKTENQALADKKLGQLEAQ
LLSRKTLEGQPLADVFYGYGEDNSLARETFELLVKYDKTITAAESLTAGLFQSTLASFPGASQVFNGGFVTYSMEEKAKM
LGLPLEELKSHGVVSAYTAEGMAEQARLLAGADIGVSLTGVAGPDMLEEQPAGTVFIGLATQNKIESIKVLISGRSRLDV
RYIATLHAFNMVRKTLLKLENLL

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=520712 JF649_RS08490 WP_129322339.1 1726818..1728089(-) (cinA) [Streptococcus pyogenes strain MGAS270]
ATGAAAGCTGAACTGATTGCAGTAGGTACCGAAATTTTGACTGGTCAAATTGTGAATACCAATGCTCAATTTCTGTCGGA
AAAAATGGCAGAGCTAGGTATTGATGTCTATTTTCAAACGGCTGTTGGGGACAACGAGGAGCGTTTACTTTCAGTGATTA
CAACTGCTAGTCATCGTAGTGACTTGGTGATTTTATGTGGTGGCCTTGGTCCAACGAAAGATGATTTAACCAAACAAACT
TTAGCAAAGTACCTTAGGAAAGACTTGGTTTATGATGAGCAAGCTTGTCAGAAACTAGATGACTTTTTTGCTAAGCGCAA
GCCTTCATCACGGACACCAAATAATGAGCGACAGGCACAAGTGATTGAAGGGTCAATCTCTTTGCCAAATAAAACTGGTC
TTGCGGTTGGTGGGTTCATCACAGTCGATGGTATTAGTTATGTTGTCTTACCGGGTCCTCCAAGTGAATTGAAGCCGATG
GTAAATGAAGAATTGGTACCACTTCTGTCAAAACAATACAGTACATTGTATTCAAAGGTACTACGCTTTTTTGGTATTGG
GGAAAGTCAGTTGGTAACAGTCTTGTCAGATTTTATTGAGAATCAAACTGATCCAACCATTGCTCCGTATGCTAAGACTG
GCGAAGTGACTCTTCGCTTATCAACAAAAACTGAAAACCAAGCTCTGGCAGATAAAAAGTTAGGTCAGCTAGAAGCGCAG
CTACTATCCCGAAAAACTCTTGAAGGTCAACCCTTAGCTGATGTCTTTTATGGCTATGGGGAGGATAATTCCTTAGCGCG
TGAGACATTTGAGCTCTTAGTAAAATATGATAAGACAATTACAGCAGCAGAAAGTCTAACCGCGGGATTATTTCAGTCAA
CTTTGGCGAGTTTTCCAGGAGCTTCTCAAGTATTCAATGGAGGCTTTGTGACTTATAGCATGGAAGAAAAAGCGAAAATG
CTAGGCCTTCCTTTAGAGGAGTTGAAATCGCATGGCGTTGTTAGTGCTTATACAGCCGAGGGGATGGCGGAGCAAGCAAG
GCTATTGGCTGGTGCTGATATTGGGGTAAGTTTAACAGGTGTTGCCGGACCAGATATGTTGGAGGAACAGCCTGCAGGTA
CAGTTTTCATTGGCCTTGCCACTCAAAATAAGATAGAATCAATAAAGGTTTTGATTAGCGGGCGAAGTCGTTTGGATGTG
CGCTATATCGCTACTTTACATGCCTTTAATATGGTCCGTAAAACTTTATTAAAACTTGAGAATTTGCTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

69.267

100

0.693

  cinA Streptococcus mitis SK321

69.305

98.582

0.683

  cinA Streptococcus mitis NCTC 12261

68.825

98.582

0.678

  cinA Streptococcus pneumoniae TIGR4

67.866

98.582

0.669

  cinA Streptococcus pneumoniae Rx1

67.866

98.582

0.669

  cinA Streptococcus pneumoniae R6

67.866

98.582

0.669

  cinA Streptococcus pneumoniae D39

67.626

98.582

0.667

  cinA Streptococcus suis isolate S10

53.365

98.345

0.525

  cinA Bacillus subtilis subsp. subtilis str. 168

46.411

98.818

0.459