Detailed information NTG0052060

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: SMUGS5_RS08945
• Genome accession: NC_018089
• Coordinates: 1847408..1847812 (-)
• Length: 134 a.a.
• NCBI ID: WP_002264246.1
• Uniprot ID: -
• Organism: Streptococcus mutans GS-5
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1842408..1852812

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SMUGS5_RS08910 (SMUGS5_08890)	-	1842544..1842789 (-)	246	WP_002263444.1	helix-turn-helix transcriptional regulator	-
SMUGS5_RS08915	tnpA	1843414..1843877 (-)	464	Protein_1737	IS200/IS605 family transposase	-
SMUGS5_RS08920 (SMUGS5_08900)	-	1844090..1845289 (-)	1200	WP_002263443.1	acetate kinase	-
SMUGS5_RS08925 (SMUGS5_08905)	comYH	1845348..1846301 (-)	954	WP_014835049.1	class I SAM-dependent methyltransferase	Machinery gene
SMUGS5_RS10590	comYG	1846356..1846727 (-)	372	WP_042899578.1	competence type IV pilus minor pilin ComGG	Machinery gene
SMUGS5_RS10595	comGF	1846728..1847156 (-)	429	Protein_1741	competence type IV pilus minor pilin ComGF	-
SMUGS5_RS08940 (SMUGS5_08915)	comYE	1847143..1847436 (-)	294	WP_002263439.1	competence type IV pilus minor pilin ComGE	Machinery gene
SMUGS5_RS08945 (SMUGS5_08920)	comYD	1847408..1847812 (-)	405	WP_002264246.1	competence type IV pilus minor pilin ComGD	Machinery gene
SMUGS5_RS08950 (SMUGS5_08925)	comYC	1847799..1848113 (-)	315	WP_002263437.1	competence type IV pilus major pilin ComGC	Machinery gene
SMUGS5_RS08955 (SMUGS5_08930)	comYB	1848113..1849144 (-)	1032	WP_255262721.1	competence type IV pilus assembly protein ComGB	Machinery gene
SMUGS5_RS08960 (SMUGS5_08935)	comYA	1849080..1850021 (-)	942	WP_002282214.1	competence type IV pilus ATPase ComGA	Machinery gene
SMUGS5_RS08965 (SMUGS5_08940)	-	1850151..1850534 (-)	384	WP_002263434.1	DUF1033 family protein	-

Sequence

Protein

• Length: 134 a.a.
• Molecular weight: 15425.73 Da
• Isoelectric Point: 9.2271

>NTDB_id=52060 SMUGS5_RS08945 WP_002264246.1 1847408..1847812(-) (comYD) [Streptococcus mutans GS-5]
MSRIKAFTLIESLVTLAITSFLILSFSGSITQTFAKVEEHLFFLSFEHLYRDTQKLSVYQRQDMTLILKSEYISNGVEVL
KIPKDVKLERNKTLHFDQAGGNSSLEKLVFQTSDEKRVTYQLYIGSGQYKKTES

Nucleotide

• Length: 405 bp

>NTDB_id=52060 SMUGS5_RS08945 WP_002264246.1 1847408..1847812(-) (comYD) [Streptococcus mutans GS-5]
ATGTCGCGAATTAAAGCTTTTACGCTTATAGAAAGTTTAGTGACTTTGGCAATTACTAGTTTTTTGATTTTAAGCTTTTC
AGGTAGTATAACTCAAACGTTTGCCAAAGTAGAAGAGCATCTCTTTTTTCTTTCTTTTGAACATCTTTACCGTGACACGC
AAAAACTTAGTGTTTATCAAAGACAAGATATGACTTTAATATTAAAAAGCGAATATATCTCAAATGGTGTTGAAGTACTT
AAAATCCCTAAGGATGTCAAACTAGAGAGGAATAAAACTTTGCACTTTGATCAGGCAGGAGGAAATTCTTCTTTAGAAAA
ACTTGTTTTTCAAACATCTGATGAAAAAAGAGTTACTTATCAATTATATATAGGAAGTGGTCAGTATAAAAAAACAGAAA
GTTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (1-25)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	99.254	100	0.993
comYD	Streptococcus mutans UA159	99.254	100	0.993
comYD	Streptococcus gordonii str. Challis substr. CH1	50.388	96.269	0.485
comGD/cglD	Streptococcus mitis NCTC 12261	49.612	96.269	0.478
comGD/cglD	Streptococcus pneumoniae Rx1	49.219	95.522	0.47
comGD/cglD	Streptococcus pneumoniae D39	49.219	95.522	0.47
comGD/cglD	Streptococcus pneumoniae R6	49.219	95.522	0.47
comGD/cglD	Streptococcus pneumoniae TIGR4	48.438	95.522	0.463
comGD/cglD	Streptococcus mitis SK321	48.438	95.522	0.463
comGD	Lactococcus lactis subsp. cremoris KW2	39.394	98.507	0.388