Detailed information NTG0052058

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: YB51_RS10005
• Genome accession: NC_022516
• Coordinates: 2028145..2029239 (+)
• Length: 364 a.a.
• NCBI ID: WP_022540734.1
• Uniprot ID: -
• Organism: Streptococcus suis YB51
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2023145..2034239

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
YB51_RS09975 (YB51_9970)	-	2023231..2023977 (-)	747	WP_013730689.1	Bro-N domain-containing protein	-
YB51_RS09980 (YB51_9975)	-	2023996..2024223 (-)	228	WP_013730690.1	helix-turn-helix domain-containing protein	-
YB51_RS09985 (YB51_9980)	-	2024377..2025090 (+)	714	WP_013730691.1	helix-turn-helix domain-containing protein	-
YB51_RS09990 (YB51_9985)	-	2025454..2026284 (+)	831	WP_013730692.1	KilA-N domain-containing protein	-
YB51_RS09995 (YB51_9990)	-	2026449..2027621 (+)	1173	WP_013730693.1	tyrosine-type recombinase/integrase	-
YB51_RS10000 (YB51_9995)	yaaA	2027759..2028142 (+)	384	WP_002936175.1	S4 domain-containing protein YaaA	-
YB51_RS10005 (YB51_10000)	recF	2028145..2029239 (+)	1095	WP_022540734.1	DNA replication/repair protein RecF	Machinery gene
YB51_RS10010 (YB51_10010)	-	2029679..2030881 (-)	1203	WP_002935295.1	IS110-like element ISSsu7 family transposase	-
YB51_RS10015 (YB51_10015)	guaB	2031132..2032613 (-)	1482	WP_014637236.1	IMP dehydrogenase	-
YB51_RS10020 (YB51_10020)	trpS	2032845..2033870 (-)	1026	WP_013730696.1	tryptophan--tRNA ligase	-

Sequence

Protein

• Length: 364 a.a.
• Molecular weight: 42056.65 Da
• Isoelectric Point: 7.2233

>NTDB_id=52058 YB51_RS10005 WP_022540734.1 2028145..2029239(+) (recF) [Streptococcus suis YB51]
MWLXXELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGKV
PLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQRN
TYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIKLTDDVNLIDKFLTE
LERCRKRDLFKKNTGVGPHRDDVAFFINGMNAHYGSQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQI
KLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide

• Length: 1095 bp

>NTDB_id=52058 YB51_RS10005 WP_022540734.1 2028145..2029239(+) (recF) [Streptococcus suis YB51]
ATGTGGCTASAAYGAWTMGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCCCTTGACATTCACTTGACAGACAAGGGGCGAGTGACCAAGGTCAACCATCTCAAACAAGCCAAGCTTTCCAACTA
TATCGGCCACATGAATGTTGTTCTCTTCGCCCCTGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TCATCGATGTCGAGCTCGGGCAAATCAAGCCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCCGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGAAATATCTGGCA
ATCGGGAAGAATTGACAATCGAATACCAAACCTCAATCAAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACG
GAATTGGAAAGGTGTCGCAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGGTAGCCAAGGTCAGCACCGCAGTCTCGTTCTGTCACTCAAACTGGCTGAAATTG
AGCTGATGAAGGAGGTCACACGAGAATACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTAGATAATAATCGTCAA
ATCAAACTACTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (6-357)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	69.806	99.449	0.694
recF	Bacillus subtilis subsp. subtilis str. 168	43.681	100	0.438