Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   SCIM_RS02465 Genome accession   NC_018073
Coordinates   501331..501945 (+) Length   204 a.a.
NCBI ID   WP_257995664.1    Uniprot ID   -
Organism   Streptococcus intermedius JTH08     
Function   degradation of ComX; degradation of ComW (predicted from homology)   
Competence regulation

Genomic Context

Location: 496331..506945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCIM_RS02455 (SCIM_0433) mgtA 497861..500515 (+) 2655 WP_003078159.1 magnesium-translocating P-type ATPase -
  SCIM_RS02460 (SCIM_0434) upp 500613..501242 (+) 630 WP_003025639.1 uracil phosphoribosyltransferase -
  SCIM_RS02465 (SCIM_0435) clpP 501331..501945 (+) 615 WP_257995664.1 ATP-dependent Clp protease proteolytic subunit Regulator
  SCIM_RS02470 - 502036..502305 (+) 270 WP_003073520.1 DUF2129 domain-containing protein -
  SCIM_RS02475 (SCIM_0436) - 502388..503551 (+) 1164 WP_003078199.1 ABC transporter substrate-binding protein -
  SCIM_RS02480 (SCIM_0437) - 503935..504804 (+) 870 WP_003043257.1 branched-chain amino acid ABC transporter permease -
  SCIM_RS02485 (SCIM_0438) - 504808..505758 (+) 951 WP_003078202.1 branched-chain amino acid ABC transporter permease -
  SCIM_RS02490 (SCIM_0439) - 505758..506522 (+) 765 WP_003078178.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22423.59 Da        Isoelectric Point: 4.8512

>NTDB_id=51861 SCIM_RS02465 WP_257995664.1 501331..501945(+) (clpP) [Streptococcus intermedius JTH08]
MSDKKENTMIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGAVEDNMANSIIAQLLFLDAQDSTKDIYLYINTPGGSVSAG
LAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNNLEK
ILADNSGKTVKQVHKDAERDYWMSAQETLDYGFIDEIMANNNLN

Nucleotide


Download         Length: 615 bp        

>NTDB_id=51861 SCIM_RS02465 WP_257995664.1 501331..501945(+) (clpP) [Streptococcus intermedius JTH08]
ATATCAGATAAAAAGGAGAATACAATGATTCCTGTAGTTATTGAACAAACAAGCCGTGGGGAACGCTCGTACGATATTTA
CTCACGCCTTTTAAAAGATCGTATTATTATGCTCACTGGAGCGGTTGAAGATAACATGGCCAATTCCATTATTGCCCAAT
TGCTTTTCCTAGACGCTCAAGATAGTACAAAGGATATTTATCTTTATATCAATACACCAGGAGGTTCTGTATCGGCGGGT
CTAGCGATTGTCGATACAATGAACTTCATCAAATCAGATGTTCAAACAATTGTCATGGGAATGGCTGCGTCCATGGGAAC
CATCATCGCTTCAAGTGGTGCTAAAGGCAAACGCTTTATGTTGCCAAATGCAGAGTACATGATTCACCAACCAATGGGTG
GAACTGGTGGCGGTACGCAACAAACCGATATGGCGATTGCTGCTGAACATTTGCTGAAAACTCGAAACAATTTGGAAAAA
ATTCTTGCAGATAATTCTGGTAAGACCGTTAAGCAAGTTCATAAAGATGCTGAACGTGACTACTGGATGAGTGCTCAAGA
AACGCTAGATTATGGTTTCATTGATGAAATCATGGCAAATAACAACTTGAACTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(19-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pneumoniae TIGR4

91.837

96.078

0.882
  clpP Streptococcus pneumoniae R6

91.837

96.078

0.882
  clpP Streptococcus pneumoniae D39

91.837

96.078

0.882
  clpP Streptococcus pneumoniae Rx1

91.837

96.078

0.882
  clpP Streptococcus mutans UA159

88.67

99.51

0.882
  clpP Streptococcus thermophilus LMG 18311

91.795

95.588

0.877
  clpP Streptococcus thermophilus LMD-9

91.795

95.588

0.877
  clpP Streptococcus pyogenes MGAS315

91.282

95.588

0.873
  clpP Streptococcus pyogenes JRS4

91.282

95.588

0.873
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

85.128

95.588

0.814
  clpP Lactococcus lactis subsp. cremoris KW2

84.615

95.588

0.809
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.549

94.608

0.554
  clpP Bacillus subtilis subsp. subtilis str. 168

57.812

94.118

0.544

Multiple sequence alignment