Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   JC773_RS19345 Genome accession   NZ_CP066185
Coordinates   3802910..3804148 (-) Length   412 a.a.
NCBI ID   WP_210351744.1    Uniprot ID   -
Organism   Bacillus cytotoxicus strain PDT2.12     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3797910..3809148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC773_RS19325 (JC773_19325) spoVS 3798251..3798511 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  JC773_RS19330 (JC773_19330) - 3798659..3799453 (-) 795 WP_012094869.1 TIGR00282 family metallophosphoesterase -
  JC773_RS19335 (JC773_19335) rny 3799668..3801230 (-) 1563 WP_012094870.1 ribonuclease Y -
  JC773_RS19340 (JC773_19340) recA 3801736..3802767 (-) 1032 WP_012094871.1 recombinase RecA Machinery gene
  JC773_RS19345 (JC773_19345) cinA 3802910..3804148 (-) 1239 WP_210351744.1 competence/damage-inducible protein A Machinery gene
  JC773_RS19350 (JC773_19350) pgsA 3804169..3804747 (-) 579 WP_210351745.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JC773_RS19355 (JC773_19355) - 3804811..3805737 (-) 927 WP_210352019.1 RodZ domain-containing protein -
  JC773_RS19360 (JC773_19360) - 3805759..3806544 (-) 786 WP_012094875.1 DUF3388 domain-containing protein -
  JC773_RS19365 (JC773_19365) - 3806682..3806930 (-) 249 WP_210351746.1 DUF3243 domain-containing protein -
  JC773_RS19370 (JC773_19370) - 3807006..3807719 (-) 714 WP_041810481.1 SDR family oxidoreductase -
  JC773_RS19375 (JC773_19375) - 3807855..3809141 (-) 1287 WP_210351747.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45798.35 Da        Isoelectric Point: 6.2912

>NTDB_id=518269 JC773_RS19345 WP_210351744.1 3802910..3804148(-) (cinA) [Bacillus cytotoxicus strain PDT2.12]
MNAEIIAVGTELLLGQITNTNAKFLSEKLASIGINVYYHTVVGDNTRRLQEAIRTAEKRANILIFTGGLGPTKDDLTKET
IASIVKEDLVYDEVALTSIREYFNRTGREFTENNKKQALVLKGSTVFANNHGMAPGMGLHKNEKVYILLPGPPKEMQPMY
NSYVDPFLRNVTTGEHIYSRVLRFFGIGESQLEVKVQDLIDNQTNPTIAPLASDGEVTLRLTAKHQNVEQAELLIQQVEH
LILERVGEFFYGYNEDFLHHKAIELLKKKGFTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYHNDVKQHILQVPEKT
LQTAGAVSEECARYLAENVKLLLQSDIGISFTGVAGPDASENKEPGTVFIGLAIKDEPTIVFPLCLSGSRQQIRERTVKY
GFYHLYKKLEEM

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=518269 JC773_RS19345 WP_210351744.1 3802910..3804148(-) (cinA) [Bacillus cytotoxicus strain PDT2.12]
ATGAATGCCGAAATTATTGCGGTTGGAACAGAATTATTATTGGGGCAAATTACAAATACAAATGCGAAGTTTTTATCCGA
AAAATTAGCTTCTATTGGAATAAATGTGTATTATCATACTGTAGTAGGTGATAATACACGTCGGCTACAAGAGGCTATTC
GCACAGCTGAAAAACGTGCAAACATATTGATTTTTACTGGCGGACTCGGACCAACAAAAGATGATTTAACGAAAGAAACC
ATTGCATCGATTGTTAAGGAAGACCTTGTTTATGATGAAGTGGCACTAACATCAATTCGTGAATATTTTAATCGAACGGG
TCGTGAGTTCACAGAGAATAATAAGAAACAAGCACTCGTTTTGAAGGGTTCAACTGTATTTGCAAATAATCACGGTATGG
CGCCAGGCATGGGATTACATAAAAATGAAAAAGTGTATATTTTATTGCCAGGTCCACCGAAAGAAATGCAACCAATGTAT
AATAGCTATGTAGATCCATTCTTGCGCAATGTAACAACTGGTGAACATATTTATTCTCGTGTCCTTCGTTTTTTCGGTAT
TGGTGAATCGCAGTTAGAAGTAAAAGTACAAGATTTAATTGACAACCAAACGAATCCGACAATTGCACCGCTAGCTTCTG
ATGGAGAGGTAACGTTGCGATTAACCGCGAAACATCAGAATGTAGAGCAAGCGGAGTTATTAATTCAGCAGGTAGAACAT
TTAATCTTAGAGAGAGTAGGCGAATTTTTTTACGGCTACAATGAAGATTTCCTTCACCATAAGGCAATTGAGTTATTGAA
GAAAAAAGGTTTCACTCTAGCCTGTGCTGAAAGTTTAACAGGCGGTCTTTTTGGCAATCAAGTAACGGAAAATGCTGGTG
TGTCTTCTGTTTTTAAAGGTGGCGTAATTTGCTATCACAATGATGTAAAACAGCATATTTTACAAGTTCCTGAAAAGACT
TTACAAACGGCAGGTGCGGTGAGTGAAGAATGTGCGCGTTATCTTGCTGAAAATGTAAAATTACTTTTACAATCGGATAT
TGGAATTAGTTTTACGGGGGTCGCAGGACCGGATGCTTCAGAAAACAAAGAACCTGGAACTGTATTTATCGGTTTAGCAA
TCAAAGATGAACCGACAATAGTTTTTCCGCTTTGTTTAAGTGGGAGTCGTCAGCAAATTCGTGAACGTACTGTGAAATAT
GGATTTTATCATTTATACAAAAAGCTAGAAGAGATGTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Competence-damaged protein (CinA)

(258-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

56.796

100

0.568
  cinA Streptococcus mitis SK321

46.778

100

0.476
  cinA Streptococcus pneumoniae TIGR4

46.778

100

0.476
  cinA Streptococcus pneumoniae R6

46.301

100

0.471
  cinA Streptococcus pneumoniae Rx1

46.301

100

0.471
  cinA Streptococcus pneumoniae D39

46.062

100

0.468
  cinA Streptococcus mitis NCTC 12261

45.823

100

0.466
  cinA Streptococcus mutans UA159

45.074

98.544

0.444
  cinA Streptococcus suis isolate S10

41.114

91.505

0.376