Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ITG10_RS12795 Genome accession   NZ_CP066149
Coordinates   2849741..2850040 (+) Length   99 a.a.
NCBI ID   WP_017631690.1    Uniprot ID   -
Organism   Vibrio sp. ED004     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2844741..2855040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG10_RS12785 (ITG10_12700) - 2847137..2847430 (+) 294 WP_012604504.1 HU family DNA-binding protein -
  ITG10_RS12790 (ITG10_12705) ppiD 2847650..2849515 (+) 1866 WP_017631691.1 peptidylprolyl isomerase -
  ITG10_RS12795 (ITG10_12710) comEA 2849741..2850040 (+) 300 WP_017631690.1 ComEA family DNA-binding protein Machinery gene
  ITG10_RS12800 (ITG10_12715) rrtA 2850031..2850579 (-) 549 WP_248386427.1 rhombosortase -
  ITG10_RS12805 (ITG10_12720) - 2850589..2851188 (+) 600 WP_017631688.1 DTW domain-containing protein -
  ITG10_RS12810 (ITG10_12725) - 2851215..2852558 (-) 1344 WP_017631687.1 anti-phage deoxyguanosine triphosphatase -
  ITG10_RS12815 (ITG10_12730) yfbR 2852614..2853198 (-) 585 WP_017631686.1 5'-deoxynucleotidase -
  ITG10_RS12820 (ITG10_12735) - 2853528..2854763 (-) 1236 WP_026084153.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10752.23 Da        Isoelectric Point: 4.4944

>NTDB_id=517891 ITG10_RS12795 WP_017631690.1 2849741..2850040(+) (comEA) [Vibrio sp. ED004]
MRAIYSTLLISFLITLSSAVFADSPTKAELYDGIEITVNINTATAEELSALLVGVGDKKAKEIVDYREKNGEFSSADSLV
NVKGIGEATVEKNRERIQL

Nucleotide


Download         Length: 300 bp        

>NTDB_id=517891 ITG10_RS12795 WP_017631690.1 2849741..2850040(+) (comEA) [Vibrio sp. ED004]
ATGCGCGCGATATATTCAACACTACTGATTTCATTTCTTATTACTCTCAGCTCTGCCGTGTTTGCAGACAGCCCGACTAA
GGCTGAGCTTTACGATGGTATTGAGATCACGGTAAACATCAATACAGCGACAGCAGAAGAGCTATCAGCATTATTGGTGG
GCGTGGGTGATAAGAAGGCGAAAGAGATCGTCGATTACAGAGAGAAGAACGGAGAGTTCTCCTCGGCAGATAGCTTGGTT
AATGTGAAAGGGATAGGTGAGGCAACGGTTGAAAAGAACCGCGAAAGAATTCAGCTTTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

55.319

94.949

0.525
  comEA Vibrio cholerae C6706

53.125

96.97

0.515
  comEA Vibrio cholerae strain A1552

53.125

96.97

0.515
  comEA Vibrio campbellii strain DS40M4

53.261

92.929

0.495
  comEA Acinetobacter baylyi ADP1

48.78

82.828

0.404
  comEA/comE1 Glaesserella parasuis strain SC1401

61.667

60.606

0.374
  comE1/comEA Haemophilus influenzae Rd KW20

60

60.606

0.364
  comEA Legionella pneumophila str. Paris

35.294

100

0.364
  comEA Legionella pneumophila strain ERS1305867

35.294

100

0.364