Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   I6H73_RS00055 Genome accession   NZ_CP066073
Coordinates   15776..16102 (+) Length   108 a.a.
NCBI ID   WP_003055259.1    Uniprot ID   A0A9X8T184
Organism   Streptococcus dysgalactiae strain FDAARGOS_1016     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 10776..21102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H73_RS00040 (I6H73_00040) - 13420..13785 (+) 366 WP_003055257.1 DUF1033 family protein -
  I6H73_RS00045 (I6H73_00045) comGA/cglA 13866..14807 (+) 942 WP_003055265.1 competence type IV pilus ATPase ComGA Machinery gene
  I6H73_RS00050 (I6H73_00050) comYB 14743..15774 (+) 1032 WP_015057201.1 competence type IV pilus assembly protein ComGB Machinery gene
  I6H73_RS00055 (I6H73_00055) comYC 15776..16102 (+) 327 WP_003055259.1 competence type IV pilus major pilin ComGC Machinery gene
  I6H73_RS00060 (I6H73_00060) - 16139..17593 (-) 1455 WP_003055278.1 recombinase family protein -
  I6H73_RS00065 (I6H73_00065) - 17730..18221 (-) 492 WP_003055290.1 hypothetical protein -
  I6H73_RS00070 (I6H73_00070) - 18232..19002 (-) 771 WP_003055282.1 XRE family transcriptional regulator -
  I6H73_RS00075 (I6H73_00075) - 19203..19406 (+) 204 WP_003058516.1 helix-turn-helix transcriptional regulator -
  I6H73_RS00080 (I6H73_00080) - 19695..19844 (+) 150 WP_003058552.1 hypothetical protein -
  I6H73_RS00085 (I6H73_00085) - 19884..20231 (+) 348 WP_003058582.1 hypothetical protein -
  I6H73_RS00090 (I6H73_00090) - 20492..20740 (+) 249 WP_003058590.1 hypothetical protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12384.38 Da        Isoelectric Point: 9.6412

>NTDB_id=517154 I6H73_RS00055 WP_003055259.1 15776..16102(+) (comYC) [Streptococcus dysgalactiae strain FDAARGOS_1016]
MKNQWKPLRQYQLQAFTLLEMLLVILVISVLMLLFVPNLSKQKDRVTETGNAAVVKLVENQAELYELSQGSKPSLSQLKT
DGSITDKQVKAYTDYYGKHRDETQKLQP

Nucleotide


Download         Length: 327 bp        

>NTDB_id=517154 I6H73_RS00055 WP_003055259.1 15776..16102(+) (comYC) [Streptococcus dysgalactiae strain FDAARGOS_1016]
ATGAAAAACCAATGGAAACCATTACGGCAATACCAACTACAAGCTTTCACACTTCTAGAAATGTTACTGGTAATTTTAGT
CATCAGTGTCTTAATGCTCTTATTTGTACCTAATTTAAGCAAACAAAAAGATAGGGTTACCGAAACAGGAAATGCTGCTG
TTGTCAAATTAGTGGAGAATCAAGCAGAGTTGTACGAATTATCGCAAGGATCAAAACCAAGTTTAAGTCAATTAAAGACT
GATGGCAGTATTACAGATAAGCAGGTAAAAGCTTACACAGACTATTATGGAAAACACAGAGATGAGACTCAAAAACTGCA
ACCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus gordonii str. Challis substr. CH1

60.194

95.37

0.574
  comGC/cglC Streptococcus mitis SK321

53.774

98.148

0.528
  comGC Lactococcus lactis subsp. cremoris KW2

54.369

95.37

0.519
  comGC/cglC Streptococcus mitis NCTC 12261

55.556

91.667

0.509
  comGC/cglC Streptococcus pneumoniae Rx1

51.887

98.148

0.509
  comGC/cglC Streptococcus pneumoniae D39

51.887

98.148

0.509
  comGC/cglC Streptococcus pneumoniae R6

51.887

98.148

0.509
  comGC/cglC Streptococcus pneumoniae TIGR4

51.402

99.074

0.509
  comYC Streptococcus mutans UA140

53.465

93.519

0.5
  comYC Streptococcus mutans UA159

53.465

93.519

0.5
  comYC Streptococcus suis isolate S10

50.562

82.407

0.417