Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   I6I32_RS03895 Genome accession   NZ_CP066041
Coordinates   818041..820020 (-) Length   659 a.a.
NCBI ID   WP_198464969.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1075     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 813041..825020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I32_RS03875 (I6I32_03875) amiF 813536..814465 (-) 930 WP_001291311.1 ATP-binding cassette domain-containing protein Regulator
  I6I32_RS03880 (I6I32_03880) amiE 814476..815543 (-) 1068 WP_198464968.1 ABC transporter ATP-binding protein Regulator
  I6I32_RS03885 (I6I32_03885) amiD 815552..816478 (-) 927 WP_007522372.1 oligopeptide ABC transporter permease OppC Regulator
  I6I32_RS03890 (I6I32_03890) amiC 816478..817974 (-) 1497 WP_000759894.1 ABC transporter permease Regulator
  I6I32_RS03895 (I6I32_03895) amiA 818041..820020 (-) 1980 WP_198464969.1 peptide ABC transporter substrate-binding protein Regulator
  I6I32_RS03905 (I6I32_03905) - 820522..821853 (-) 1332 WP_198464970.1 hemolysin family protein -
  I6I32_RS03910 (I6I32_03910) endA 821989..822813 (-) 825 WP_198464971.1 DNA/RNA non-specific endonuclease Machinery gene
  I6I32_RS03915 (I6I32_03915) - 822854..823048 (-) 195 WP_000739701.1 DNA-directed RNA polymerase subunit beta -
  I6I32_RS03920 (I6I32_03920) murA 823035..824318 (-) 1284 WP_000411918.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  I6I32_RS03925 (I6I32_03925) - 824342..824572 (-) 231 WP_002892633.1 DUF1146 family protein -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72690.81 Da        Isoelectric Point: 4.8333

>NTDB_id=516641 I6I32_RS03895 WP_198464969.1 818041..820020(-) (amiA) [Streptococcus oralis strain FDAARGOS_1075]
MKKSRVFVAAGVALLAAGVLAACGSSKSSDSTAPKNYGYVYSADPETLDYLISGKQSTKVATSNGIDGLFTNDKYGNLVP
AVAEDWSVSKDGLTYTYKIRKGVKWMTSDGEEYAEVKAKDFVNGLKHAADNKSEALYLAEDSVKGLADYKAGNNKDFSSV
GVKAVDDYTLEYTLNQPEPYWNSKMAYAIFWPLNEDFEKSKGADFAKATDPTSLLYNGPFLLKGLTAKSSIEFAKNENYW
DKDNVHIDKVTLAFYDGSDQESIERNFTSGAYSYARLYPTSSNYSKVEETYKDNIYYTPSGPGIGGLGVNIDRQGYKYTS
KTTDEEKTSTKKALLNKDFRQALNFAFDRTSYSAQINGKEGAPLAVRNLFVKPGFVSAGEKTFGDLVTEKMAAYGDEWKN
VNFADGQDGLFNADKAKAEFAKAKTALEAEGVKFPIHLDIPVDQTSKNYIARIQSFKQSVETVLGEGNVVIDIQQISKDE
LNNITYYAASAAAEDWDLSGAVGWNPDYEDPSTYLDILKTTNAEQTKTYMGYEGADNAAAAQVGLKEYDKLVDEAAKETN
DLNVRYEKYAAAQAWLTDSSLFLPAMSSSGAAPIISRVVPFTASYSQSGDKGSDVYFKYIQLQDKVVTKADYEQAREKWL
KEKKESNEKVQKELANHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=516641 I6I32_RS03895 WP_198464969.1 818041..820020(-) (amiA) [Streptococcus oralis strain FDAARGOS_1075]
ATGAAAAAAAGTAGAGTATTTGTTGCAGCAGGTGTTGCTTTATTAGCAGCAGGAGTGCTAGCTGCTTGCGGTTCTTCAAA
ATCATCTGATTCAACAGCGCCAAAAAATTATGGCTATGTTTATTCAGCTGACCCAGAAACGTTGGATTACCTCATTTCAG
GGAAACAAAGTACTAAGGTTGCCACTTCAAATGGTATCGATGGTCTCTTCACAAATGACAAATATGGGAATCTAGTTCCT
GCAGTTGCAGAAGACTGGTCAGTTTCAAAAGATGGTTTGACCTATACCTACAAGATTCGTAAAGGTGTTAAATGGATGAC
ATCAGATGGTGAAGAATATGCTGAAGTGAAAGCGAAAGACTTTGTAAATGGCTTGAAACACGCGGCTGATAACAAGTCTG
AAGCACTTTATCTAGCAGAAGATTCAGTTAAAGGTCTAGCTGACTATAAAGCTGGAAATAATAAAGACTTTTCTTCAGTC
GGTGTAAAGGCAGTTGATGATTATACTCTTGAGTATACTTTGAATCAACCAGAACCATACTGGAACTCTAAGATGGCCTA
CGCAATCTTCTGGCCATTGAACGAAGATTTTGAAAAATCAAAAGGGGCTGACTTTGCCAAAGCAACTGACCCTACATCAT
TGCTTTACAATGGTCCATTCTTACTGAAAGGTTTGACTGCTAAATCTTCTATAGAGTTTGCTAAGAATGAAAACTACTGG
GACAAAGATAATGTTCACATTGATAAAGTAACCCTTGCTTTCTATGATGGGTCAGACCAAGAATCTATTGAACGTAACTT
TACAAGTGGAGCTTATAGCTATGCTCGTCTTTACCCAACAAGTTCAAACTACTCTAAGGTAGAAGAAACATACAAAGACA
ATATCTACTACACTCCATCAGGACCTGGTATTGGTGGTTTGGGTGTGAATATTGACCGTCAAGGTTACAAATACACTTCT
AAAACAACTGATGAAGAGAAGACTTCTACCAAGAAAGCCCTTCTTAACAAGGACTTCCGTCAGGCTTTGAACTTCGCCTT
TGACCGTACTTCTTACTCAGCACAAATTAATGGTAAAGAAGGTGCTCCTCTTGCAGTTCGTAACCTCTTTGTGAAACCAG
GTTTTGTCTCTGCAGGTGAAAAAACTTTCGGTGACTTGGTAACTGAAAAGATGGCTGCTTACGGTGATGAGTGGAAGAAT
GTTAACTTTGCGGATGGTCAAGATGGACTCTTCAACGCCGATAAAGCCAAAGCTGAATTTGCCAAAGCTAAAACAGCATT
GGAAGCAGAAGGTGTGAAATTCCCTATTCACTTGGATATCCCAGTAGACCAAACATCTAAAAACTATATTGCACGTATCC
AATCCTTCAAACAATCCGTTGAAACAGTACTTGGTGAAGGCAACGTAGTCATTGATATCCAACAAATTTCTAAAGATGAG
TTGAACAACATCACTTACTACGCAGCTAGCGCAGCAGCAGAAGATTGGGATCTTTCAGGTGCTGTTGGATGGAACCCTGA
CTATGAAGATCCATCAACTTACCTTGATATCTTGAAGACAACGAATGCTGAACAAACAAAAACATACATGGGTTACGAAG
GTGCAGATAATGCTGCAGCGGCTCAAGTTGGTTTGAAAGAATACGATAAGCTAGTTGATGAAGCTGCTAAGGAAACCAAC
GACTTGAATGTTCGTTATGAAAAATATGCGGCTGCCCAAGCTTGGTTGACAGATAGCTCACTCTTCTTGCCAGCTATGTC
ATCAAGTGGTGCTGCACCAATCATTTCTCGTGTTGTACCATTCACAGCATCTTACAGTCAATCTGGAGATAAGGGTTCAG
ATGTATACTTCAAATATATTCAGTTGCAAGACAAGGTTGTAACCAAAGCTGACTATGAACAAGCTCGTGAGAAATGGCTC
AAAGAGAAAAAAGAATCAAACGAAAAAGTTCAAAAAGAATTGGCTAATCACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

68.134

100

0.681
  amiA3 Streptococcus thermophilus LMG 18311

67.576

100

0.677
  amiA3 Streptococcus thermophilus LMD-9

67.424

100

0.675