Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiE   Type   Regulator
Locus tag   I6I32_RS03880 Genome accession   NZ_CP066041
Coordinates   814476..815543 (-) Length   355 a.a.
NCBI ID   WP_198464968.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1075     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 809476..820543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I32_RS03860 (I6I32_03860) - 809751..810254 (-) 504 WP_198464965.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  I6I32_RS03865 (I6I32_03865) trkA 810655..812004 (+) 1350 WP_198464966.1 Trk system potassium transporter TrkA -
  I6I32_RS03870 (I6I32_03870) - 812008..813447 (+) 1440 WP_198464967.1 TrkH family potassium uptake protein -
  I6I32_RS03875 (I6I32_03875) amiF 813536..814465 (-) 930 WP_001291311.1 ATP-binding cassette domain-containing protein Regulator
  I6I32_RS03880 (I6I32_03880) amiE 814476..815543 (-) 1068 WP_198464968.1 ABC transporter ATP-binding protein Regulator
  I6I32_RS03885 (I6I32_03885) amiD 815552..816478 (-) 927 WP_007522372.1 oligopeptide ABC transporter permease OppC Regulator
  I6I32_RS03890 (I6I32_03890) amiC 816478..817974 (-) 1497 WP_000759894.1 ABC transporter permease Regulator
  I6I32_RS03895 (I6I32_03895) amiA 818041..820020 (-) 1980 WP_198464969.1 peptide ABC transporter substrate-binding protein Regulator

Sequence


Protein


Download         Length: 355 a.a.        Molecular weight: 39499.15 Da        Isoelectric Point: 4.6920

>NTDB_id=516638 I6I32_RS03880 WP_198464968.1 814476..815543(-) (amiE) [Streptococcus oralis strain FDAARGOS_1075]
MTKESNVILTARDIVVEFDVRDKVLTAIRGVSLDLIEGEVLALVGESGSGKSVLTKTFTGMLEDNGRIAQGSIDYRGQGL
TALTSNKEWEKIRGAKIATIFQDPMTSLDPINTIGSQITEVIIKHQGKTAKEAKEMAIDYMNKVGIPDAEKRFEEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKTLQNEYHFTIIFITHDLGVVASIADKVAVMYAGEIVE
YGTVEEVFYDPRHPYTWSLLSSLPQLADDKGELYSIPGTPPSLYTELKGDAFALRSDYAMQIDFEQKAPQFSVTDTHWAK
TWLLHENAPKVEKPGVIADLHDKIRDKMGFAHLED

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=516638 I6I32_RS03880 WP_198464968.1 814476..815543(-) (amiE) [Streptococcus oralis strain FDAARGOS_1075]
ATGACAAAAGAAAGTAATGTAATTTTGACTGCTCGTGATATTGTCGTGGAATTTGACGTTCGTGACAAAGTTCTGACGGC
TATCCGAGGAGTTTCTCTGGACCTGATTGAAGGAGAAGTTCTTGCCTTGGTAGGTGAGTCTGGTTCTGGTAAATCTGTTT
TAACAAAAACCTTTACAGGGATGTTAGAAGACAATGGACGTATTGCCCAAGGAAGCATCGACTATCGTGGACAAGGCTTG
ACTGCTCTTACTTCTAACAAGGAATGGGAGAAGATTCGTGGTGCTAAAATTGCGACCATCTTCCAAGACCCTATGACAAG
TTTGGATCCAATCAATACAATCGGTAGCCAAATCACTGAAGTGATCATTAAACACCAAGGGAAAACAGCTAAGGAAGCCA
AAGAGATGGCAATCGACTATATGAACAAGGTCGGAATCCCAGATGCTGAAAAACGTTTTGAAGAGTATCCTTTCCAATAT
TCTGGAGGGATGCGCCAACGTATCGTTATTGCGATTGCCCTTGCCTGTCGTCCAGATATCTTGATCTGTGACGAGCCAAC
AACGGCCCTTGACGTTACCATTCAAGCGCAAATTATTGATTTGCTTAAAACCTTGCAAAATGAGTACCACTTTACCATCA
TCTTTATCACCCATGACCTTGGTGTGGTAGCAAGTATTGCGGATAAGGTAGCGGTTATGTATGCTGGGGAAATTGTAGAA
TACGGAACTGTTGAGGAAGTTTTCTACGACCCACGTCATCCATATACTTGGAGTCTCTTGTCTAGCTTGCCTCAGCTTGC
TGACGATAAAGGGGAATTGTACTCTATCCCTGGAACACCACCGTCTCTTTATACTGAGTTGAAAGGTGATGCCTTTGCCC
TTCGTTCAGATTATGCGATGCAAATTGACTTTGAACAGAAAGCACCTCAGTTTTCAGTCACTGATACCCACTGGGCTAAG
ACTTGGTTGCTTCATGAGAATGCTCCTAAAGTTGAAAAACCTGGAGTCATTGCAGATTTGCATGACAAGATTCGTGATAA
AATGGGCTTTGCTCATCTAGAAGACTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

85.634

100

0.856

  amiE Streptococcus thermophilus LMG 18311

83.662

100

0.837

  amiE Streptococcus thermophilus LMD-9

83.662

100

0.837

  oppD Streptococcus mutans UA159

54.545

99.155

0.541