Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   I6I32_RS03875 Genome accession   NZ_CP066041
Coordinates   813536..814465 (-) Length   309 a.a.
NCBI ID   WP_001291311.1    Uniprot ID   A0A291D7C0
Organism   Streptococcus oralis strain FDAARGOS_1075     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 808536..819465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I32_RS03855 (I6I32_03855) - 808654..809217 (-) 564 WP_049478361.1 ECF transporter S component -
  I6I32_RS03860 (I6I32_03860) - 809751..810254 (-) 504 WP_198464965.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  I6I32_RS03865 (I6I32_03865) trkA 810655..812004 (+) 1350 WP_198464966.1 Trk system potassium transporter TrkA -
  I6I32_RS03870 (I6I32_03870) - 812008..813447 (+) 1440 WP_198464967.1 TrkH family potassium uptake protein -
  I6I32_RS03875 (I6I32_03875) amiF 813536..814465 (-) 930 WP_001291311.1 ATP-binding cassette domain-containing protein Regulator
  I6I32_RS03880 (I6I32_03880) amiE 814476..815543 (-) 1068 WP_198464968.1 ABC transporter ATP-binding protein Regulator
  I6I32_RS03885 (I6I32_03885) amiD 815552..816478 (-) 927 WP_007522372.1 oligopeptide ABC transporter permease OppC Regulator
  I6I32_RS03890 (I6I32_03890) amiC 816478..817974 (-) 1497 WP_000759894.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35053.25 Da        Isoelectric Point: 7.0424

>NTDB_id=516637 I6I32_RS03875 WP_001291311.1 813536..814465(-) (amiF) [Streptococcus oralis strain FDAARGOS_1075]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNNTSKGEIIFDGHKINGKKSHK
ESSDLIRRIQMIFQDPAASLNERATVDYIISEGLYNYHLFKDEEDRKEKVQKMIHEVGLLKEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPVHPYTQALLSAVPIPDPILERKKVLKVYDPDQHDYETDKPSMVEIRPGHYVWANQAEVARYKEALKK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=516637 I6I32_RS03875 WP_001291311.1 813536..814465(-) (amiF) [Streptococcus oralis strain FDAARGOS_1075]
ATGTCTGAAAAATTAGTAGAAATTAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
CGCCAACTTCTTTATCAACAAGGGAGAAACATTCTCTCTTGTAGGTGAGTCTGGTAGTGGGAAAACAACCATTGGTCGTG
CCATTATTGGTCTAAATAATACTAGTAAAGGTGAGATCATCTTTGATGGTCATAAGATTAATGGGAAGAAATCTCATAAG
GAATCATCAGATTTGATCCGTCGTATCCAGATGATTTTCCAGGACCCTGCAGCTAGCTTGAATGAGCGTGCGACAGTTGA
CTATATCATCTCTGAAGGTCTTTACAACTACCATTTGTTTAAAGATGAAGAGGATCGAAAAGAAAAAGTTCAAAAGATGA
TCCATGAAGTTGGACTTTTGAAAGAACACTTGACCCGTTATCCACACGAGTTTTCTGGTGGTCAACGCCAGCGTATCGGG
ATTGCCCGTGCTCTTGTGATGGAACCTGATTTCGTTATTGCGGATGAGCCAATTTCAGCCTTAGACGTATCTGTTCGCGC
GCAAGTCTTGAACTTGCTCAAGAAGTTCCAAAAAGAGTTGGGCTTGACTTATCTCTTCATCGCGCATGACTTGTCAGTTG
TTCGCTTTATCTCAGATCGTATCGCGGTTATCTATAAGGGAGTTATCGTCGAGGTGGCGGAGACAGAGGAGTTGTTTAAC
AATCCTGTCCACCCATACACTCAAGCACTTCTATCTGCTGTACCAATTCCAGATCCAATCTTGGAACGCAAGAAGGTCTT
GAAAGTTTACGATCCTGACCAACATGACTATGAGACAGACAAGCCGTCTATGGTAGAAATTCGTCCAGGTCACTATGTTT
GGGCTAACCAAGCGGAAGTTGCTCGATACAAAGAAGCTCTTAAAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A291D7C0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

85.113

100

0.851
  amiF Streptococcus thermophilus LMG 18311

84.142

100

0.841
  amiF Streptococcus thermophilus LMD-9

83.819

100

0.838