Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   I6I32_RS03885 Genome accession   NZ_CP066041
Coordinates   815552..816478 (-) Length   308 a.a.
NCBI ID   WP_007522372.1    Uniprot ID   A0A3R9I9B2
Organism   Streptococcus oralis strain FDAARGOS_1075     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 810552..821478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I32_RS03865 (I6I32_03865) trkA 810655..812004 (+) 1350 WP_198464966.1 Trk system potassium transporter TrkA -
  I6I32_RS03870 (I6I32_03870) - 812008..813447 (+) 1440 WP_198464967.1 TrkH family potassium uptake protein -
  I6I32_RS03875 (I6I32_03875) amiF 813536..814465 (-) 930 WP_001291311.1 ATP-binding cassette domain-containing protein Regulator
  I6I32_RS03880 (I6I32_03880) amiE 814476..815543 (-) 1068 WP_198464968.1 ABC transporter ATP-binding protein Regulator
  I6I32_RS03885 (I6I32_03885) amiD 815552..816478 (-) 927 WP_007522372.1 oligopeptide ABC transporter permease OppC Regulator
  I6I32_RS03890 (I6I32_03890) amiC 816478..817974 (-) 1497 WP_000759894.1 ABC transporter permease Regulator
  I6I32_RS03895 (I6I32_03895) amiA 818041..820020 (-) 1980 WP_198464969.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34633.66 Da        Isoelectric Point: 9.0162

>NTDB_id=516639 I6I32_RS03885 WP_007522372.1 815552..816478(-) (amiD) [Streptococcus oralis strain FDAARGOS_1075]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWGSVFRQFLKKKSTVIMLGILVAIILMSFIYPMFSDFDFNDVSKVNDFSAR
FIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATFINLVIGVIVGGIWGISKSVDRVMMEVYNIISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAYMIRIQIMRYRDLEYNLASQTLGTPTFKIIVKNIMPQLVSVIVSTMTLMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=516639 I6I32_RS03885 WP_007522372.1 815552..816478(-) (amiD) [Streptococcus oralis strain FDAARGOS_1075]
ATGTCAACAATCGATAAAGAAAAATTTCAGTTCGTAAAACGTGACGATTTTGCCTCTGAAACAATTGATGCTCCTGCCTA
TTCATACTGGGGTTCTGTATTTAGACAATTTCTAAAGAAAAAATCAACAGTCATTATGTTGGGGATTTTGGTTGCCATTA
TCTTGATGAGCTTTATTTACCCAATGTTCTCAGATTTTGATTTCAACGATGTAAGTAAGGTCAATGACTTTAGTGCTCGT
TTTATCAAGCCCAATGCTGAACATTGGTTTGGTACAGATAGCAATGGTAAATCCTTGTTTGACGGGGTTTGGTTTGGTGC
GCGTAACTCTATCCTCATCTCTGTAATTGCAACTTTTATCAACCTTGTGATCGGGGTTATTGTTGGTGGAATCTGGGGAA
TTTCAAAATCTGTAGACCGTGTCATGATGGAAGTTTATAACATTATTTCAAACATTCCATCTCTCTTGATTGTCATTGTC
TTGACTTACTCAATTGGTGCTGGTTTCTGGAATTTGATTTTTGCCATGAGTGTGACAACTTGGATTGGGATTGCATATAT
GATTCGTATCCAAATCATGCGTTACCGTGACTTAGAATACAACCTTGCTTCTCAAACGCTTGGAACACCAACCTTTAAAA
TCATTGTTAAAAACATCATGCCGCAATTGGTATCTGTTATTGTTTCTACAATGACCTTGATGTTGCCAAGCTTCATCTCT
TATGAAGCCTTCCTTTCCTTCTTTGGATTGGGATTGCCTGTAACAGTACCAAGTTTGGGACGTTTGATCTCAGATTACTC
ACAAAACGTTACGACCAACGCTTACTTATTCTGGATTCCATTGACAACCTTGATCTTGGTATCCCTATCTCTTTTCGTTG
TTGGTCAAAACCTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(123-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R9I9B2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.442

100

0.834
  amiD Streptococcus thermophilus LMG 18311

81.818

100

0.818
  amiD Streptococcus thermophilus LMD-9

81.818

100

0.818