Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   I6I32_RS03890 Genome accession   NZ_CP066041
Coordinates   816478..817974 (-) Length   498 a.a.
NCBI ID   WP_000759894.1    Uniprot ID   A0A139PWX2
Organism   Streptococcus oralis strain FDAARGOS_1075     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 811478..822974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I32_RS03870 (I6I32_03870) - 812008..813447 (+) 1440 WP_198464967.1 TrkH family potassium uptake protein -
  I6I32_RS03875 (I6I32_03875) amiF 813536..814465 (-) 930 WP_001291311.1 ATP-binding cassette domain-containing protein Regulator
  I6I32_RS03880 (I6I32_03880) amiE 814476..815543 (-) 1068 WP_198464968.1 ABC transporter ATP-binding protein Regulator
  I6I32_RS03885 (I6I32_03885) amiD 815552..816478 (-) 927 WP_007522372.1 oligopeptide ABC transporter permease OppC Regulator
  I6I32_RS03890 (I6I32_03890) amiC 816478..817974 (-) 1497 WP_000759894.1 ABC transporter permease Regulator
  I6I32_RS03895 (I6I32_03895) amiA 818041..820020 (-) 1980 WP_198464969.1 peptide ABC transporter substrate-binding protein Regulator
  I6I32_RS03905 (I6I32_03905) - 820522..821853 (-) 1332 WP_198464970.1 hemolysin family protein -
  I6I32_RS03910 (I6I32_03910) endA 821989..822813 (-) 825 WP_198464971.1 DNA/RNA non-specific endonuclease Machinery gene

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55743.13 Da        Isoelectric Point: 9.2425

>NTDB_id=516640 I6I32_RS03890 WP_000759894.1 816478..817974(-) (amiC) [Streptococcus oralis strain FDAARGOS_1075]
MKKYIFMRVLRSLLSIFLVTTLTYTIIYTMVPRKLIFKQDTNYNKIATTPDKRDNYENTVYERMGYIEYYDTKELQERAS
TMDSSVTVDANDTNKAIYEKYINQLGNGWTLGVFSESGQFYATREIPIFERVFKFYSNLIDIDHPNKIQDPENPNLQRYL
RFENDPAIGWSLVGSGTKHKYLLYFNNQFPFVHQNFVNINLGDSYPTYANTPVLQVITQGQGQTKTSEVQFPTGKKTSSV
DIYSRTYKSPSQADAREVANYGKDDPYTATESNYQYPSMIASSAVAGLIGLIISYAIAIPLGSAMARHKNTWIDSFSTGA
LTFLLALPTIALVYIVRLIGSSIGLPDSFPILGAGDWRSYVLPAVILGLLGAPSTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSLFVGD
IWMTMLDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=516640 I6I32_RS03890 WP_000759894.1 816478..817974(-) (amiC) [Streptococcus oralis strain FDAARGOS_1075]
ATGAAGAAATATATTTTTATGCGTGTATTGCGTTCATTGTTGTCTATTTTCTTGGTGACAACCTTGACCTACACAATTAT
CTATACGATGGTTCCTCGAAAATTGATTTTCAAGCAGGATACCAACTATAACAAGATTGCAACGACGCCGGACAAGCGGG
ATAATTATGAAAATACCGTTTATGAACGGATGGGCTATATCGAGTACTACGATACCAAGGAGTTGCAAGAAAGAGCGAGC
ACAATGGACTCATCTGTAACAGTGGATGCCAATGATACCAATAAGGCAATCTACGAAAAATACATCAACCAACTAGGAAA
TGGTTGGACACTTGGTGTGTTCTCAGAAAGTGGTCAATTCTATGCTACGCGTGAAATTCCAATTTTTGAACGTGTTTTCA
AATTCTATTCCAACTTGATTGATATTGATCATCCAAACAAGATTCAAGACCCTGAAAATCCAAACTTGCAACGTTATCTT
CGTTTTGAAAATGACCCTGCTATCGGTTGGTCATTGGTTGGTTCAGGTACAAAACATAAATACCTTTTGTATTTCAACAA
TCAATTCCCATTTGTACACCAAAACTTTGTGAACATTAACTTGGGAGATTCTTACCCAACTTATGCAAACACACCAGTGC
TTCAAGTTATCACACAAGGTCAGGGACAAACTAAGACATCAGAAGTTCAATTCCCTACAGGTAAGAAGACTTCATCTGTA
GATATTTACTCTCGTACCTACAAATCTCCAAGTCAAGCAGACGCGCGTGAAGTAGCCAACTATGGTAAAGACGATCCATA
TACAGCTACAGAAAGCAATTATCAATATCCTTCAATGATCGCAAGCTCAGCGGTCGCTGGTTTGATTGGTTTGATTATTT
CGTATGCGATTGCGATTCCACTTGGATCTGCTATGGCTCGCCACAAGAATACTTGGATTGACAGCTTCTCGACAGGTGCT
CTAACCTTCTTGCTTGCCCTTCCAACGATTGCCTTGGTTTATATCGTGCGTTTGATTGGCTCATCTATTGGTCTGCCTGA
CTCATTCCCTATCTTGGGGGCTGGAGATTGGCGTTCTTATGTCTTACCAGCAGTCATTCTAGGTTTGTTGGGTGCGCCAA
GTACAGCTATCTGGATTCGTCGTTACATGATCGACTTGCAATCTCAGGACTTTGTACGTTTTGCTCGTGCCAAAGGTTTG
TCTGAAAAAGAAATTTCAAATAAACACATCTTTAAAAATGCCATGGTTCCTTTGGTTTCAGGTATTCCTGGTGCCGTAAT
CGGAGTTATTGGTGGTGCAACATTGACAGAAACAGTCTTCGCTTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTTA
AGGCATCAAACAACTCAATGGTAGTTGGTCTTGTCTTCATCTTCACATGTATTTCTATCTTCTCACTCTTTGTAGGAGAC
ATCTGGATGACCATGCTTGACCCACGTATTAAATTGACAGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A139PWX2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

76.707

100

0.767
  amiC Streptococcus thermophilus LMG 18311

76.104

100

0.761
  amiC Streptococcus thermophilus LMD-9

75.904

100

0.759