Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   I6I32_RS03910 Genome accession   NZ_CP066041
Coordinates   821989..822813 (-) Length   274 a.a.
NCBI ID   WP_198464971.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1075     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 816989..827813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I32_RS03895 (I6I32_03895) amiA 818041..820020 (-) 1980 WP_198464969.1 peptide ABC transporter substrate-binding protein Regulator
  I6I32_RS03905 (I6I32_03905) - 820522..821853 (-) 1332 WP_198464970.1 hemolysin family protein -
  I6I32_RS03910 (I6I32_03910) endA 821989..822813 (-) 825 WP_198464971.1 DNA/RNA non-specific endonuclease Machinery gene
  I6I32_RS03915 (I6I32_03915) - 822854..823048 (-) 195 WP_000739701.1 DNA-directed RNA polymerase subunit beta -
  I6I32_RS03920 (I6I32_03920) murA 823035..824318 (-) 1284 WP_000411918.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  I6I32_RS03925 (I6I32_03925) - 824342..824572 (-) 231 WP_002892633.1 DUF1146 family protein -
  I6I32_RS03930 (I6I32_03930) sepM 824628..825665 (-) 1038 WP_000730772.1 SepM family pheromone-processing serine protease Regulator
  I6I32_RS03935 (I6I32_03935) coaD 825649..826137 (-) 489 WP_198464972.1 pantetheine-phosphate adenylyltransferase -
  I6I32_RS03940 (I6I32_03940) rsmD 826127..826666 (-) 540 WP_198464973.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  I6I32_RS03945 (I6I32_03945) asnA 826731..827723 (-) 993 WP_061409759.1 aspartate--ammonia ligase -

Sequence

Protein


Download         Length: 274 a.a.        Molecular weight: 29958.57 Da        Isoelectric Point: 9.7190

>NTDB_id=516642 I6I32_RS03910 WP_198464971.1 821989..822813(-) (endA) [Streptococcus oralis strain FDAARGOS_1075]
MDKKTRQALIGLLLFLLLAAGSYYIKQMQSAPNTPRTKVSQKKQASEAPSQELAESVLTESIKNQIKGNLEWNGAGAFIV
NGNKTNLDAKVSSKPYADNKTKTVGKETVPTVANAILSKATRQYKNREETGNGSTSWTPPGWHQVKNLKGAYTHAVDRGH
LLGYALIGGLDGFDASTSNPKNIAVQTAWANQAQAEDSTGQNYYESLVRKALDQNKRVRYRVTLHYATNEDLVPSASQIE
AKSSDGELEFNVLIPNVQKGIQLDYQTGQVTVTD

Nucleotide


Download         Length: 825 bp        

>NTDB_id=516642 I6I32_RS03910 WP_198464971.1 821989..822813(-) (endA) [Streptococcus oralis strain FDAARGOS_1075]
ATGGACAAAAAAACAAGACAAGCTCTGATAGGGTTACTTCTATTCTTACTCTTGGCTGCTGGAAGCTACTACATCAAGCA
GATGCAGTCAGCGCCAAACACCCCTAGAACCAAGGTTAGTCAGAAAAAACAAGCTTCAGAAGCTCCTAGTCAGGAGTTGG
CTGAAAGTGTCTTAACTGAGTCAATCAAAAACCAAATCAAGGGTAATCTCGAGTGGAATGGAGCAGGGGCCTTCATTGTC
AATGGCAATAAAACCAATCTAGATGCCAAGGTTTCAAGCAAACCCTATGCGGATAATAAAACAAAGACAGTGGGAAAAGA
AACAGTTCCAACTGTTGCCAATGCCATCTTATCCAAAGCGACTCGGCAGTATAAGAATCGTGAAGAAACAGGCAACGGCT
CAACCTCCTGGACGCCACCAGGATGGCATCAGGTCAAGAATCTAAAGGGAGCCTATACACATGCAGTCGATAGAGGACAC
CTGCTGGGTTATGCCTTGATAGGTGGTTTGGATGGTTTTGATGCCTCTACCAGCAATCCCAAGAACATTGCAGTCCAGAC
AGCTTGGGCAAACCAAGCGCAGGCTGAAGATTCGACAGGTCAGAACTACTATGAGAGTTTGGTCAGAAAAGCCTTGGACC
AAAACAAGAGAGTCCGTTATCGAGTGACGCTCCACTATGCGACAAATGAGGACCTAGTTCCATCGGCTTCACAAATCGAA
GCCAAGTCTTCAGATGGCGAATTGGAATTCAATGTCCTAATCCCCAATGTTCAAAAGGGAATCCAGCTTGATTACCAAAC
GGGTCAAGTAACAGTGACAGATTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(76-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

89.377

99.635

0.891
  endA Streptococcus pneumoniae D39

89.377

99.635

0.891
  endA Streptococcus pneumoniae R6

89.377

99.635

0.891
  endA Streptococcus pneumoniae TIGR4

89.377

99.635

0.891