Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   I6H85_RS02195 Genome accession   NZ_CP066027
Coordinates   422682..423197 (+) Length   171 a.a.
NCBI ID   WP_002777750.1    Uniprot ID   -
Organism   Campylobacter coli strain FDAARGOS_1028     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 417682..428197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H85_RS02170 (I6H85_02170) - 418138..418476 (+) 339 WP_002777761.1 hypothetical protein -
  I6H85_RS02175 (I6H85_02175) - 418485..419210 (+) 726 WP_002777758.1 phosphatidate cytidylyltransferase -
  I6H85_RS02180 (I6H85_02180) dxr 419207..420283 (+) 1077 WP_002777756.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  I6H85_RS02185 (I6H85_02185) - 420280..421674 (+) 1395 WP_002777754.1 M99 family carboxypeptidase catalytic domain-containing protein -
  I6H85_RS02190 (I6H85_02190) tsaD 421671..422678 (+) 1008 WP_002777752.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  I6H85_RS02195 (I6H85_02195) ctsG 422682..423197 (+) 516 WP_002777750.1 type II secretion system protein Machinery gene
  I6H85_RS02200 (I6H85_02200) - 423197..424438 (+) 1242 WP_002777748.1 DUF2920 family protein -
  I6H85_RS02205 (I6H85_02205) - 424448..426271 (+) 1824 WP_130790911.1 motility associated factor glycosyltransferase family protein -
  I6H85_RS02210 (I6H85_02210) - 426268..428088 (+) 1821 WP_002777743.1 motility associated factor glycosyltransferase family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18798.59 Da        Isoelectric Point: 5.7697

>NTDB_id=516565 I6H85_RS02195 WP_002777750.1 422682..423197(+) (ctsG) [Campylobacter coli strain FDAARGOS_1028]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYALKNSHLNTMNFMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFIDRADFILMGISSNEVSKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=516565 I6H85_RS02195 WP_002777750.1 422682..423197(+) (ctsG) [Campylobacter coli strain FDAARGOS_1028]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATCAATGATATAAGCATCT
ATGCCTTAAAAAATAGTCATTTAAACACTATGAATTTTATGAGCAATGTAAGTGGAGTAGAAAATGTCGATCTTGGCAAT
TTCAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAGATAGAGCGGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGTAAGCAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

87.719

100

0.877