Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   I6H85_RS02150 Genome accession   NZ_CP066027
Coordinates   414098..415066 (-) Length   322 a.a.
NCBI ID   WP_002777769.1    Uniprot ID   -
Organism   Campylobacter coli strain FDAARGOS_1028     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 409098..420066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H85_RS02130 (I6H85_02130) - 410613..411245 (-) 633 WP_002777778.1 membrane protein -
  I6H85_RS02135 (I6H85_02135) - 411411..412400 (-) 990 WP_002777774.1 siderophore ABC transporter substrate-binding protein -
  I6H85_RS02140 (I6H85_02140) - 412415..413170 (-) 756 WP_002777772.1 ABC transporter ATP-binding protein -
  I6H85_RS02145 (I6H85_02145) - 413167..414105 (-) 939 WP_002777770.1 iron chelate uptake ABC transporter family permease subunit -
  I6H85_RS02150 (I6H85_02150) ceuB 414098..415066 (-) 969 WP_002777769.1 ABC transporter permease Machinery gene
  I6H85_RS02155 (I6H85_02155) - 415199..416092 (-) 894 WP_002777767.1 phospholipase A -
  I6H85_RS02160 (I6H85_02160) - 416191..416766 (-) 576 WP_002797427.1 molybdenum cofactor guanylyltransferase -
  I6H85_RS02165 (I6H85_02165) - 416829..418136 (+) 1308 WP_048813176.1 NFACT family protein -
  I6H85_RS02170 (I6H85_02170) - 418138..418476 (+) 339 WP_002777761.1 hypothetical protein -
  I6H85_RS02175 (I6H85_02175) - 418485..419210 (+) 726 WP_002777758.1 phosphatidate cytidylyltransferase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35539.39 Da        Isoelectric Point: 9.5069

>NTDB_id=516564 I6H85_RS02150 WP_002777769.1 414098..415066(-) (ceuB) [Campylobacter coli strain FDAARGOS_1028]
MLFKHLFSLNILLILLVVFGMISLFIGVIRINLDDIFSLSATQLEIILLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFTQTIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIINAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIAGMGEDLALNLGVSYNTILFLGLIIVSIITSVV
IVSIGVIPFLGLIIPNLVAIYRGDNLKKNLIYIALCGALFLLICDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKT
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=516564 I6H85_RS02150 WP_002777769.1 414098..415066(-) (ceuB) [Campylobacter coli strain FDAARGOS_1028]
TTGCTTTTTAAACACTTGTTTAGTTTAAATATTCTTTTAATTTTACTTGTTGTTTTTGGAATGATAAGCTTATTTATAGG
GGTTATTCGTATCAATTTAGACGATATTTTTTCACTCAGCGCTACCCAGCTTGAAATCATTTTACTTACAAGAATTCCAA
GGCTTATTGCAATTTTACTTACAGGTATGAGTCTTAGTATATGCGGACTCATCATGCAACAACTCACACAAAATAAATTT
GTTTCTCCAACCACTGCAGGGACTATGGATTGTGCTAAATTTGGCATTTTGATTTCTTTAATATTTTTTACAGGAGCTTC
TTTTTTTACTCAAACTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTCTAAGAAAAATTA
AACTTAAAGATGTGATTTTTGTGCCTTTGATAGGATTAATGTTTGGTGGGATTATAAATGCTATAACCACTTTTTTTGCT
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAGGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTTTATATTTCTTTACCGCTTTTTATACTTGCTTATTTTCTAGCCCATAAAATCACTATAGCAGGTATGGGAGAAGATC
TTGCTTTAAATCTTGGAGTTTCTTATAATACAATCTTATTTTTAGGCTTAATAATAGTTTCTATTATCACTAGCGTAGTG
ATTGTAAGCATTGGAGTTATACCTTTTTTAGGTCTTATCATCCCTAATCTTGTTGCCATTTATCGCGGGGATAATCTTAA
GAAAAATCTTATCTATATAGCATTATGCGGGGCTTTGTTTTTACTTATTTGCGATATTATCTCAAGACTTGTGATTTTTC
CTTTTGAAATGCCTTTGAGTATAACCACAGGTGTTTTGGGCTCTTTAATTTTTATTTTTCTTTTACTCAAAAGGAAAACT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

89.752

100

0.898