Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   I6H77_RS05320 Genome accession   NZ_CP066021
Coordinates   1087117..1088265 (+) Length   382 a.a.
NCBI ID   WP_001085515.1    Uniprot ID   A0A125YYW9
Organism   Streptococcus oralis strain FDAARGOS_1020     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1082117..1093265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H77_RS05290 (I6H77_05290) ndk 1082473..1082892 (+) 420 WP_000438309.1 nucleoside-diphosphate kinase -
  I6H77_RS05295 (I6H77_05295) comM 1083027..1083650 (+) 624 WP_000240908.1 hypothetical protein Regulator
  I6H77_RS05300 (I6H77_05300) tsaE 1083734..1084177 (+) 444 WP_000556960.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  I6H77_RS05305 (I6H77_05305) - 1084167..1084688 (+) 522 WP_000455521.1 GNAT family N-acetyltransferase -
  I6H77_RS05310 (I6H77_05310) brpA 1084693..1085733 (+) 1041 WP_000592174.1 biofilm formation/cell division transcriptional regulator BrpA -
  I6H77_RS05315 (I6H77_05315) cinA 1085806..1087062 (+) 1257 WP_000642669.1 competence/damage-inducible protein A Machinery gene
  I6H77_RS05320 (I6H77_05320) recA 1087117..1088265 (+) 1149 WP_001085515.1 recombinase RecA Machinery gene
  I6H77_RS05325 (I6H77_05325) - 1088435..1088629 (+) 195 WP_000415528.1 PspC domain-containing protein -
  I6H77_RS05330 (I6H77_05330) - 1088760..1089314 (-) 555 WP_000060285.1 GNAT family N-acetyltransferase -
  I6H77_RS05335 (I6H77_05335) - 1089424..1090794 (+) 1371 WP_002874864.1 MATE family efflux transporter -
  I6H77_RS05340 (I6H77_05340) - 1090891..1091607 (+) 717 WP_000532891.1 YebC/PmpR family DNA-binding transcriptional regulator -
  I6H77_RS05345 (I6H77_05345) - 1091658..1092362 (-) 705 WP_000675584.1 CD20-like domain-containing protein -
  I6H77_RS05350 (I6H77_05350) - 1092556..1093017 (+) 462 WP_000360517.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence


Protein


Download         Length: 382 a.a.        Molecular weight: 40877.47 Da        Isoelectric Point: 4.9502

>NTDB_id=516481 I6H77_RS05320 WP_001085515.1 1087117..1088265(+) (recA) [Streptococcus oralis strain FDAARGOS_1020]
MAKKPTKKLDEIGKKFGADREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSV
AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVR
GSTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIQKAGAWYSYKGEKIGQGS
ENAKKYLADHPEIFDAIDHQVRVQYGLIEDEEASDHSPVAEATSNQEVTLDLGDDLGIEIEE

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=516481 I6H77_RS05320 WP_001085515.1 1087117..1088265(+) (recA) [Streptococcus oralis strain FDAARGOS_1020]
ATGGCGAAAAAACCAACAAAAAAATTAGATGAAATTGGGAAAAAATTTGGAGCTGACCGTGAAAAAGCATTGAACGATGC
TCTTAAATTGATTGAGAAAGACTTTGGTAAGGGTTCAATCATGCGCTTGGGTGAACGTGCAGAGCAAAAGGTGCAAGTGA
TGAGCTCAGGCTCATTGGCTCTTGACATTGCCCTTGGTTCAGGTGGTTATCCTAAAGGACGTATCATCGAAATCTATGGA
CCAGAATCATCTGGTAAGACAACGGTTGCCCTTCACGCTGTTGCGCAAGCACAGAAAGAAGGTGGTATTGCAGCCTTTAT
CGATGCGGAACATGCTCTTGACCCAGCCTATGCTGCAGCCCTTGGTGTGAATATTGACGAATTGCTCTTGTCACAACCAG
ACTCAGGTGAACAAGGTCTTGAAATTGCTGGAAAATTGATTGACTCAGGTGCAGTTGACCTTGTCGTTATCGACTCAGTT
GCGGCCCTTGTACCTCGTGCGGAAATTGATGGGGATATTGGAGACAGTCACGTTGGTTTGCAGGCTCGAATGATGAGCCA
GGCCATGCGTAAACTCGGAGCTTCTATCAATAAAACCAAAACAATTGCCATCTTTATCAACCAATTGCGTGAAAAAGTTG
GGGTCATGTTTGGAAATCCAGAAACAACACCTGGTGGACGTGCTTTGAAATTCTACGCTTCAGTCCGTTTGGATGTTCGT
GGAAGCACACAAATCAAAGGAACTGGTGACCAAAAAGATACCAATGTCGGTAAGGAAACCAAGATCAAGGTCGTGAAAAA
CAAGGTAGCTCCACCATTTAAGGAAGCCTTTGTTGAAATCATGTACGGAGAAGGGATTTCTAAAACTGGTGAGCTCTTGA
AGATCGCAAGTGATCTCGATATCATCCAAAAAGCGGGAGCATGGTACTCTTACAAGGGTGAAAAAATCGGACAAGGATCT
GAAAATGCTAAGAAATACTTGGCGGATCACCCAGAGATTTTTGATGCTATTGACCATCAAGTTCGTGTTCAATATGGGTT
GATTGAAGATGAAGAAGCTTCTGATCATAGTCCAGTAGCGGAGGCGACTTCTAATCAAGAAGTAACACTTGACCTTGGCG
ATGATCTTGGAATCGAAATTGAAGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A125YYW9

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis SK321

93.247

100

0.94

  recA Streptococcus mitis NCTC 12261

93.247

100

0.94

  recA Streptococcus pneumoniae Rx1

90.231

100

0.919

  recA Streptococcus pneumoniae D39

90.231

100

0.919

  recA Streptococcus pneumoniae R6

90.231

100

0.919

  recA Streptococcus pneumoniae TIGR4

90.231

100

0.919

  recA Streptococcus pyogenes NZ131

85.34

100

0.853

  recA Streptococcus mutans UA159

83.812

100

0.84

  recA Lactococcus lactis subsp. cremoris KW2

77.465

92.932

0.72

  recA Bacillus subtilis subsp. subtilis str. 168

69.091

86.387

0.597

  recA Latilactobacillus sakei subsp. sakei 23K

69.301

86.126

0.597

  recA Acinetobacter baumannii D1279779

60

90.314

0.542

  recA Glaesserella parasuis strain SC1401

59.249

90.576

0.537

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.848

84.555

0.531

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.585

85.864

0.529

  recA Acinetobacter baylyi ADP1

58.601

89.791

0.526

  recA Neisseria gonorrhoeae MS11

60.909

86.387

0.526

  recA Neisseria gonorrhoeae MS11

60.909

86.387

0.526

  recA Neisseria gonorrhoeae strain FA1090

60.909

86.387

0.526

  recA Vibrio cholerae strain A1552

61.728

84.817

0.524

  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.728

84.817

0.524

  recA Pseudomonas stutzeri DSM 10701

55.714

91.623

0.51

  recA Ralstonia pseudosolanacearum GMI1000

56.891

89.267

0.508

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.576

86.387

0.497

  recA Helicobacter pylori 26695

57.143

86.126

0.492

  recA Helicobacter pylori strain NCTC11637

57.143

86.126

0.492