Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   I6I14_RS05345 Genome accession   NZ_CP065992
Coordinates   1164865..1166112 (-) Length   415 a.a.
NCBI ID   WP_034700048.1    Uniprot ID   -
Organism   Enterococcus hirae strain FDAARGOS_1057     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 1159865..1171112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I14_RS05335 (I6I14_05335) rny 1161737..1163293 (-) 1557 WP_010720620.1 ribonuclease Y -
  I6I14_RS05340 (I6I14_05340) recA 1163719..1164759 (-) 1041 WP_010720621.1 recombinase RecA Machinery gene
  I6I14_RS05345 (I6I14_05345) cinA 1164865..1166112 (-) 1248 WP_034700048.1 competence/damage-inducible protein A Machinery gene
  I6I14_RS05350 (I6I14_05350) pgsA 1166434..1167012 (-) 579 WP_010720623.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  I6I14_RS05355 (I6I14_05355) - 1167191..1168081 (-) 891 WP_010720624.1 RodZ domain-containing protein -
  I6I14_RS05360 (I6I14_05360) yfmH 1168312..1169601 (-) 1290 WP_010720625.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  I6I14_RS05365 (I6I14_05365) yfmF 1169594..1170862 (-) 1269 WP_034700051.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45743.16 Da        Isoelectric Point: 4.8478

>NTDB_id=516062 I6I14_RS05345 WP_034700048.1 1164865..1166112(-) (cinA) [Enterococcus hirae strain FDAARGOS_1057]
MKSEIIAVGTELLLGQVVNTNATFLSEQLADLGIDVYYQTVVGDNPDRLESLLQLAETRSDLIILCGGLGPTEDDLTKEV
TAKHLGKELIQNTEGYKKLLAFFETTKRKMTENNLQQSQIIDGGIALPNRTGLALGTFYQTADHVYLLLPGPPSELKPMF
IEQARPLLEQNFPSEEMLISKVLRFYGIGESQLVTELKDLIETQINPTIAPYAKTNEVTLRLTVKTKDKHAGNQALLALE
EKVLARVGEYFYGYGDDNSLPKVVVELLKERNQTITAAESLTAGAFQSALGEISGVSQVFPGGFITYSLETKAEFLHIDD
ALLKQHGTVSQECAEQMAIQARNLAKTDYAISFTGVAGPDTLEGQPAGTVWIAVATSEGEVISQKYQFTRDRSHIRNSAV
MQGFDLIRRQLLRKK

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=516062 I6I14_RS05345 WP_034700048.1 1164865..1166112(-) (cinA) [Enterococcus hirae strain FDAARGOS_1057]
ATGAAATCAGAAATCATAGCAGTAGGGACAGAGCTTTTACTAGGACAAGTAGTCAACACGAATGCCACGTTTTTATCCGA
ACAGTTAGCAGACCTCGGGATTGATGTGTATTATCAAACGGTGGTTGGTGATAATCCCGACCGTTTAGAATCATTACTCC
AATTAGCAGAAACTAGAAGTGACTTGATCATTTTATGTGGAGGGTTGGGACCGACAGAAGACGACCTGACGAAAGAAGTT
ACTGCGAAACATCTAGGGAAAGAATTGATCCAAAACACCGAAGGCTATAAAAAATTGTTAGCATTTTTTGAAACGACCAA
GCGTAAAATGACTGAAAATAATTTACAACAATCACAAATCATCGATGGGGGGATTGCTTTACCTAATCGCACAGGCTTAG
CATTAGGTACGTTCTATCAAACAGCGGACCATGTCTATCTCTTGTTACCTGGACCACCGAGCGAATTAAAGCCAATGTTC
ATTGAACAAGCTCGCCCATTATTGGAGCAAAACTTTCCATCTGAAGAAATGCTGATCTCAAAAGTTTTACGTTTTTACGG
TATCGGGGAATCCCAACTAGTCACAGAATTAAAAGACTTGATTGAAACACAGATCAACCCAACGATTGCCCCTTACGCAA
AAACTAACGAAGTCACTTTACGATTAACTGTGAAGACCAAAGACAAACATGCAGGAAACCAAGCTTTACTTGCTTTGGAA
GAAAAAGTATTGGCGAGAGTAGGTGAGTACTTCTATGGATATGGTGATGATAATTCATTGCCTAAAGTGGTCGTAGAATT
ATTAAAGGAAAGAAACCAAACAATTACTGCAGCAGAAAGTTTGACTGCTGGAGCCTTTCAATCAGCTTTGGGAGAGATCT
CTGGTGTTTCTCAAGTCTTCCCAGGAGGCTTCATTACCTATTCTTTAGAAACTAAAGCAGAATTTTTACACATCGATGAT
GCACTATTGAAGCAGCATGGAACCGTCAGCCAAGAATGTGCAGAACAAATGGCTATCCAAGCACGTAATTTAGCAAAAAC
AGATTATGCGATTTCGTTTACTGGAGTGGCTGGACCAGATACCTTAGAAGGACAGCCAGCTGGAACAGTTTGGATCGCGG
TTGCAACAAGTGAAGGGGAGGTCATTTCGCAGAAATACCAATTTACCAGAGACCGTTCTCATATAAGGAATAGCGCAGTA
ATGCAAGGATTTGATCTCATTAGAAGACAACTATTAAGAAAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

54.067

100

0.545
  cinA Streptococcus pneumoniae TIGR4

52.857

100

0.535
  cinA Streptococcus pneumoniae Rx1

52.619

100

0.533
  cinA Streptococcus mitis SK321

52.619

100

0.533
  cinA Streptococcus pneumoniae R6

52.619

100

0.533
  cinA Streptococcus pneumoniae D39

52.619

100

0.533
  cinA Streptococcus mitis NCTC 12261

52.143

100

0.528
  cinA Bacillus subtilis subsp. subtilis str. 168

47.458

99.518

0.472
  cinA Streptococcus suis isolate S10

42.857

100

0.434