Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   I8N72_RS08680 Genome accession   NZ_CP065790
Coordinates   1714968..1716218 (+) Length   416 a.a.
NCBI ID   WP_015388221.1    Uniprot ID   -
Organism   Bacillus velezensis strain LBUM1082     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1709968..1721218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I8N72_RS08650 (I8N72_08650) yfmH 1710051..1711337 (+) 1287 WP_014305020.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  I8N72_RS08655 (I8N72_08655) ymfI 1711396..1712124 (+) 729 WP_014305021.1 elongation factor P 5-aminopentanone reductase -
  I8N72_RS08660 (I8N72_08660) - 1712200..1712457 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  I8N72_RS08665 (I8N72_08665) - 1712585..1713376 (+) 792 WP_003154149.1 DUF3388 domain-containing protein -
  I8N72_RS08670 (I8N72_08670) - 1713395..1714294 (+) 900 WP_015388222.1 helix-turn-helix domain-containing protein -
  I8N72_RS08675 (I8N72_08675) pgsA 1714369..1714950 (+) 582 WP_003154147.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  I8N72_RS08680 (I8N72_08680) cinA 1714968..1716218 (+) 1251 WP_015388221.1 competence/damage-inducible protein A Machinery gene
  I8N72_RS08685 (I8N72_08685) recA 1716389..1717432 (+) 1044 WP_003154145.1 recombinase RecA Machinery gene
  I8N72_RS08690 (I8N72_08690) - 1717601..1718782 (+) 1182 WP_015388220.1 serine hydrolase domain-containing protein -
  I8N72_RS08695 (I8N72_08695) rny 1719075..1720634 (+) 1560 WP_003154140.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45152.47 Da        Isoelectric Point: 5.3789

>NTDB_id=514469 I8N72_RS08680 WP_015388221.1 1714968..1716218(+) (cinA) [Bacillus velezensis strain LBUM1082]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFAKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
RPMFENEAKPLLLKKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERVGEFFYGYDDTSLVKELSKACRQNKITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQHVLG
VKAETLAESGAVSKECAKELASGVRKLTGSDIGISFTGVAGPDPQEGHAPGRVFIGISTEGKEEVHEFHFAGSRTGIRKR
AAKYGCHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=514469 I8N72_RS08680 WP_015388221.1 1714968..1716218(+) (cinA) [Bacillus velezensis strain LBUM1082]
ATGGAAATAGCAAAAAAAGCAGAAATCATTGCGGTCGGCTCGGAGCTTCTGCTCGGCCAGATCGCCAATACGAACGCGCA
GTTTATCAGTAAAGAACTGGCGGAAATCGGTGTAAACGTGTTTTACCATACCGCTGTCGGTGACAATCCGGAGCGGCTTA
AGCAAGTCATCCGCATTGCCGAAGAGCGCTCAGACCTGATTATTTTTTCAGGCGGCCTCGGACCGACCAAGGACGATTTG
ACGAAAGAAACCATTGCAAACACACTGGGGCGCCCGCTCGTTCTGAATGACGAAGCGTTCCGGTCGATCGAAGAATATTT
CGCGAAAACAAAACGGACCATGTCGCCGAATAACCGCAAACAGGCGCTCGTCATTGAGGGCTCGGACGTTTTGGCGAATC
ATTTCGGCATGGCGCCGGGAATGCTTGCAGAGCACGGCTCAAGGCTTTATATGCTGCTTCCCGGGCCGCCGAGCGAGCTG
CGTCCGATGTTTGAAAATGAAGCGAAACCGCTGCTTCTTAAAAAGCTTGGTTCTAATGAGAAAATCGTTTCAACCGTGCT
GCGGTTTTTCGGAATCGGTGAATCCCAGCTTGAAGCTGATTTAGAAGATATCATTGACGCGCAGACGAATCCGACGATTG
CGCCGCTTGCTGCTGACGGCGAGGTCACGCTGCGTTTAACGGCGAAACATGCTGACGAAAAAGAAACAGAACGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTAGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCCCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACAAAATCACGATTTCTTCTGCCGAAAGCTTTACAGGCGGCTTGTTTTCAGAGTGGGTGA
CTGATTTAAGCGGTGCGTCTCAACTATTTGCAGGAGGTGTTGTCTGCTATTCCGACAGCGTGAAACAGCATGTGCTCGGC
GTGAAAGCTGAGACGCTCGCAGAAAGCGGAGCGGTCAGCAAAGAGTGTGCGAAAGAGCTTGCATCCGGTGTGAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGGGTCGCGGGTCCCGACCCGCAGGAAGGGCATGCGCCGGGCCGCGTCT
TTATCGGCATATCAACGGAAGGAAAAGAAGAGGTGCACGAATTTCACTTTGCCGGCTCAAGAACCGGAATCAGAAAGCGC
GCCGCTAAATACGGCTGCCATCTCATTTTAAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Competence-damaged protein (CinA)

(261-413)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

90.144

100

0.901
  cinA Streptococcus mitis NCTC 12261

47.368

100

0.476
  cinA Streptococcus mitis SK321

46.89

100

0.471
  cinA Streptococcus pneumoniae TIGR4

46.411

100

0.466
  cinA Streptococcus pneumoniae Rx1

46.411

100

0.466
  cinA Streptococcus pneumoniae R6

46.411

100

0.466
  cinA Streptococcus pneumoniae D39

46.172

100

0.464
  cinA Streptococcus mutans UA159

46.247

99.279

0.459
  cinA Streptococcus suis isolate S10

41.176

93.99

0.387