Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   I6G48_RS11170 Genome accession   NZ_CP065695
Coordinates   2401662..2402153 (+) Length   163 a.a.
NCBI ID   WP_012202796.1    Uniprot ID   -
Organism   Delftia acidovorans strain FDAARGOS_891     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2396662..2407153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G48_RS11150 (I6G48_11145) sucD 2397650..2398543 (+) 894 WP_012202800.1 succinate--CoA ligase subunit alpha -
  I6G48_RS11155 (I6G48_11150) - 2398710..2399402 (+) 693 WP_012202799.1 TerC family protein -
  I6G48_RS11160 (I6G48_11155) - 2399698..2400480 (+) 783 WP_043780614.1 PP2C family protein-serine/threonine phosphatase -
  I6G48_RS11165 (I6G48_11160) - 2400724..2401437 (+) 714 WP_012202797.1 FHA domain-containing protein -
  I6G48_RS11170 (I6G48_11165) pilA 2401662..2402153 (+) 492 WP_012202796.1 pilin Machinery gene
  I6G48_RS11175 (I6G48_11170) - 2402359..2404302 (-) 1944 WP_012202795.1 tetratricopeptide repeat protein -
  I6G48_RS11180 (I6G48_11175) - 2404319..2404615 (-) 297 WP_225971036.1 hypothetical protein -
  I6G48_RS11185 (I6G48_11180) moaC 2404699..2405169 (-) 471 WP_012202793.1 cyclic pyranopterin monophosphate synthase MoaC -
  I6G48_RS11190 (I6G48_11185) - 2405322..2406947 (+) 1626 WP_012202792.1 M48 family metalloprotease -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 16468.71 Da        Isoelectric Point: 8.9877

>NTDB_id=513070 I6G48_RS11170 WP_012202796.1 2401662..2402153(+) (pilA) [Delftia acidovorans strain FDAARGOS_891]
MKRSIQQGFTLIELMIVVAIIGILAAVALPAYQDYTTRAKVTEGLSLAAAAKVAVAENAANGKPYNAGWMPPNATNNVAG
VTIDQAAGYITITYQTGIAGAGTLILNPIDGPKTSGTAFSGGTSTSSNIPTSGSISWNCRAAGSTGVGTAGTIQAKYTPA
ECR

Nucleotide


Download         Length: 492 bp        

>NTDB_id=513070 I6G48_RS11170 WP_012202796.1 2401662..2402153(+) (pilA) [Delftia acidovorans strain FDAARGOS_891]
ATGAAGCGTTCCATCCAGCAAGGTTTTACCTTGATCGAATTGATGATCGTTGTGGCGATCATCGGCATTTTGGCAGCCGT
TGCGCTGCCGGCTTATCAGGACTACACAACCCGCGCCAAGGTTACTGAAGGTCTTTCCCTTGCTGCCGCCGCCAAAGTGG
CCGTCGCTGAGAATGCGGCCAATGGCAAGCCCTATAACGCCGGTTGGATGCCTCCTAACGCGACCAATAACGTTGCTGGT
GTAACTATCGATCAAGCAGCAGGATACATCACGATCACTTATCAAACTGGCATCGCCGGCGCTGGCACGCTGATTCTCAA
CCCAATTGATGGCCCCAAGACTAGCGGCACTGCATTTTCCGGCGGAACCTCAACCTCCTCGAACATTCCGACCAGCGGTT
CCATCAGCTGGAATTGCCGCGCTGCTGGATCTACTGGCGTCGGCACAGCCGGCACCATCCAAGCCAAGTACACACCTGCT
GAATGCCGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Pilin (bacterial filament) (Pilin)

(37-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

49.133

100

0.521
  pilA2 Legionella pneumophila str. Paris

47.853

100

0.479
  pilA2 Legionella pneumophila strain ERS1305867

47.853

100

0.479
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

37

100

0.454
  comP Acinetobacter baylyi ADP1

39.306

100

0.417
  pilA/pilA1 Eikenella corrodens VA1

38.506

100

0.411
  pilE Neisseria gonorrhoeae MS11

38.596

100

0.405
  pilA/pilAI Pseudomonas stutzeri DSM 10701

35.714

100

0.368