Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   I6G96_RS08535 Genome accession   NZ_CP065627
Coordinates   1889526..1891142 (+) Length   538 a.a.
NCBI ID   WP_197944665.1    Uniprot ID   -
Organism   Delftia acidovorans strain FDAARGOS_939     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1884526..1896142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G96_RS08510 (I6G96_08510) argS 1884725..1886422 (+) 1698 WP_065347441.1 arginine--tRNA ligase -
  I6G96_RS08515 (I6G96_08515) - 1886443..1887132 (+) 690 WP_012202602.1 SPOR domain-containing protein -
  I6G96_RS08520 (I6G96_08520) - 1887214..1887864 (+) 651 WP_065347443.1 thiol:disulfide interchange protein DsbA/DsbL -
  I6G96_RS08525 (I6G96_08525) lptA 1888024..1888686 (+) 663 WP_013804753.1 lipopolysaccharide transport periplasmic protein LptA -
  I6G96_RS08530 (I6G96_08530) lptB 1888683..1889471 (+) 789 WP_065347444.1 LPS export ABC transporter ATP-binding protein -
  I6G96_RS08535 (I6G96_08535) rpoN/rpoN1 1889526..1891142 (+) 1617 WP_197944665.1 RNA polymerase factor sigma-54 Machinery gene
  I6G96_RS08540 (I6G96_08540) rtcR 1891181..1892788 (-) 1608 WP_065347446.1 RNA repair transcriptional activator RtcR -
  I6G96_RS08545 (I6G96_08545) - 1893486..1894625 (+) 1140 WP_012202608.1 slipin family protein -
  I6G96_RS08550 (I6G96_08550) - 1894682..1895179 (+) 498 WP_043820033.1 hypothetical protein -

Sequence

Protein


Download         Length: 538 a.a.        Molecular weight: 59272.40 Da        Isoelectric Point: 4.6094

>NTDB_id=512283 I6G96_RS08535 WP_197944665.1 1889526..1891142(+) (rpoN/rpoN1) [Delftia acidovorans strain FDAARGOS_939]
MKPGLSLRVSQHLSLTPQLQQSIQLLQLSTLELAQEVEQMLGDNPFLELANEDGDHDAAAGTREPAVPGAEATESFQESR
ADQPSAAVEWEPSSDAPSGDAVETSGTAESLSWEGDGQTNSGNDDRDWGSDAPSSRTRGQGEEDEADATELARSAESLTD
HLHRQALSLRLGEVDRAALRFLIENLNDDGYLEDPLDELAQGLAGDDLEECEELVHRFTVALRLLQSLEPVGVGARDLAE
CLTLQLRDQLADAEREGNGSAEDEDLQAVLRTALDICAQPMDLLARRDLRKLASLCGAREERLREALVLITRLEPRPGRR
FADVQRQIVVPDVIVRPVRSGAGRMDFSVQLNPDVMPKLRVHDIYASALRSHRGSEGHAALQQRLQEARWFIKNIQQRFD
TILRVSQAIVERQKNFFVHGELAMRPLVLRDIADALGLHESTISRVTTAKYMATPQGTYELKYFFGSGLGTEAGGNASST
AVRALIKQFVAAEDPKKPLSDNQLADMLKEQGIECARRTVAKYRELLKIPPTTLRKAL

Nucleotide


Download         Length: 1617 bp        

>NTDB_id=512283 I6G96_RS08535 WP_197944665.1 1889526..1891142(+) (rpoN/rpoN1) [Delftia acidovorans strain FDAARGOS_939]
TTGAAGCCCGGTCTGTCGCTGCGCGTCTCCCAGCATCTTTCGCTCACTCCCCAGCTGCAGCAGTCGATACAGCTGCTGCA
GCTGTCCACGCTGGAGCTGGCGCAGGAAGTGGAGCAGATGCTCGGCGACAACCCCTTCCTGGAGCTGGCGAACGAGGATG
GGGATCACGATGCGGCCGCCGGCACCCGCGAGCCTGCCGTGCCCGGCGCCGAGGCCACGGAGTCCTTCCAGGAAAGCCGC
GCAGACCAGCCTTCGGCGGCGGTGGAGTGGGAGCCCTCGTCGGACGCACCCTCCGGCGATGCCGTGGAGACTTCCGGCAC
GGCCGAGTCCCTGAGCTGGGAAGGCGACGGCCAGACCAACTCGGGCAACGATGACCGCGACTGGGGCAGCGATGCGCCCT
CCAGCCGCACGCGCGGGCAGGGCGAGGAAGACGAGGCCGATGCCACCGAACTGGCTCGCAGCGCCGAAAGCCTGACCGAC
CACCTGCACCGCCAGGCCCTGAGCCTGCGCCTGGGCGAGGTGGACCGCGCCGCACTGCGCTTTCTGATCGAGAACCTCAA
CGACGACGGCTACCTGGAAGACCCGCTCGACGAACTGGCACAGGGCCTGGCGGGCGACGATCTGGAGGAGTGCGAGGAAC
TGGTGCACCGCTTCACCGTGGCGCTGCGCCTGCTGCAAAGCCTGGAGCCCGTGGGCGTGGGCGCGCGCGACCTGGCCGAA
TGCCTGACGCTGCAACTGCGCGACCAGCTGGCCGATGCCGAGCGCGAAGGCAACGGCAGTGCCGAGGACGAAGACCTGCA
GGCCGTGCTGCGCACCGCGCTGGACATCTGCGCCCAGCCCATGGACCTGCTGGCGCGGCGCGACCTGCGCAAGCTCGCCA
GCCTGTGCGGTGCGCGCGAGGAGCGGCTGCGCGAGGCGCTGGTGCTGATCACCCGGCTGGAGCCACGCCCGGGCCGGCGC
TTTGCTGACGTGCAGCGCCAGATCGTCGTGCCCGACGTCATCGTGCGCCCCGTGCGCAGCGGCGCGGGCCGCATGGACTT
CAGCGTGCAGCTCAACCCGGACGTCATGCCCAAGCTGCGCGTGCACGACATCTATGCGAGCGCGCTGCGCAGTCACAGGG
GCAGCGAAGGCCATGCAGCGCTGCAGCAGCGGCTGCAGGAGGCGCGCTGGTTCATCAAGAACATCCAGCAGCGCTTCGAC
ACCATCCTGCGCGTGTCGCAGGCCATCGTGGAGCGCCAGAAGAACTTCTTCGTGCATGGCGAGCTGGCCATGCGCCCGCT
GGTGCTGCGCGACATTGCCGATGCGCTGGGCCTGCATGAATCCACCATCAGCCGCGTGACCACGGCCAAGTACATGGCCA
CGCCGCAGGGCACCTACGAGCTCAAGTACTTCTTCGGCTCGGGCCTGGGCACCGAGGCCGGTGGCAATGCCTCCAGCACG
GCCGTGCGCGCGCTGATCAAGCAGTTCGTCGCGGCCGAAGATCCCAAGAAGCCGCTGTCGGACAACCAACTCGCCGACAT
GCTCAAGGAGCAGGGCATCGAATGCGCGCGGCGCACGGTGGCCAAGTATCGCGAGCTACTCAAGATCCCGCCGACCACGC
TGCGCAAGGCGCTGTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(380-536)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-49)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(149-365)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

51.296

100

0.515