Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6G96_RS09250 Genome accession   NZ_CP065627
Coordinates   2051483..2052046 (-) Length   187 a.a.
NCBI ID   WP_197944736.1    Uniprot ID   -
Organism   Delftia acidovorans strain FDAARGOS_939     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2046483..2057046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G96_RS28750 - 2047171..2047419 (-) 249 WP_232245284.1 hypothetical protein -
  I6G96_RS09235 (I6G96_09235) - 2047876..2049330 (-) 1455 WP_415750695.1 SulP family inorganic anion transporter -
  I6G96_RS09240 (I6G96_09240) - 2049680..2050933 (-) 1254 WP_197944735.1 type II toxin-antitoxin system HipA family toxin -
  I6G96_RS09245 (I6G96_09245) - 2050917..2051237 (-) 321 WP_096914641.1 helix-turn-helix transcriptional regulator -
  I6G96_RS09250 (I6G96_09250) ssb 2051483..2052046 (-) 564 WP_197944736.1 single-stranded DNA-binding protein Machinery gene
  I6G96_RS09255 (I6G96_09255) - 2052207..2053382 (-) 1176 WP_043796511.1 MFS transporter -
  I6G96_RS09260 (I6G96_09260) uvrA 2053656..2056769 (+) 3114 WP_197944737.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20358.51 Da        Isoelectric Point: 5.9554

>NTDB_id=512284 I6G96_RS09250 WP_197944736.1 2051483..2052046(-) (ssb) [Delftia acidovorans strain FDAARGOS_939]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENKEATEWHRVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQASGQERYATEIRADSMQMLGSRQGGGGQQGGGYGDEGYGDSGYDAPPQQQQRRPAPAPMAAPAPRQAPPQ
RPAPAPMAPPPQRAASGFDDMDDDIPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=512284 I6G96_RS09250 WP_197944736.1 2051483..2052046(-) (ssb) [Delftia acidovorans strain FDAARGOS_939]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAACCTCGGACGCGACCCCGAAATGCGCACCTTCCCGAGTGGCGATCA
GGTGGCCAACGTGACCATCGCCACCACCGACCGCTGGCGCGACAAGAACACGGGCGAGAACAAGGAAGCCACCGAGTGGC
ACCGCGTGGTCTTCAACGGCCGTTTGGCCGAAATCGTGGGCCAGTACCTGCGCAAGGGCAGCCAGGTCTATGTCGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGACCAGGCCAGCGGCCAGGAACGCTACGCCACCGAAATCCGTGCCGACAGCATGCA
GATGCTGGGCAGCCGCCAGGGCGGCGGTGGCCAGCAAGGCGGCGGCTACGGCGATGAAGGCTACGGCGACAGCGGCTACG
ACGCCCCTCCCCAGCAGCAGCAGCGCCGCCCGGCCCCTGCCCCCATGGCAGCGCCCGCACCGCGCCAGGCTCCTCCCCAG
CGCCCCGCTCCTGCGCCCATGGCACCCCCGCCCCAGCGCGCGGCCTCGGGCTTTGACGACATGGATGACGACATTCCGTT
CTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.333

100

0.556
  ssb Glaesserella parasuis strain SC1401

52.062

100

0.54
  ssb Neisseria gonorrhoeae MS11

45.745

100

0.46
  ssb Neisseria meningitidis MC58

44.681

100

0.449