Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6G96_RS06490 Genome accession   NZ_CP065627
Coordinates   1433198..1434583 (-) Length   461 a.a.
NCBI ID   WP_043821911.1    Uniprot ID   A0A8I0MFX3
Organism   Delftia acidovorans strain FDAARGOS_939     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1428198..1439583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G96_RS06465 (I6G96_06465) - 1429140..1430408 (-) 1269 WP_197944513.1 O-antigen ligase family protein -
  I6G96_RS06470 (I6G96_06470) - 1430540..1431412 (+) 873 WP_197945185.1 glycosyltransferase family 32 protein -
  I6G96_RS06475 (I6G96_06475) - 1431444..1431653 (-) 210 WP_012202256.1 zinc-finger domain-containing protein -
  I6G96_RS06480 (I6G96_06480) - 1431689..1432627 (-) 939 WP_034397818.1 branched-chain amino acid transaminase -
  I6G96_RS06485 (I6G96_06485) - 1432672..1433118 (-) 447 WP_197944514.1 glycerate kinase -
  I6G96_RS06490 (I6G96_06490) radA 1433198..1434583 (-) 1386 WP_043821911.1 DNA repair protein RadA Machinery gene
  I6G96_RS06500 (I6G96_06500) - 1434871..1435683 (-) 813 WP_012202252.1 siderophore-interacting protein -
  I6G96_RS06505 (I6G96_06505) - 1435780..1436220 (+) 441 WP_012202251.1 MarR family winged helix-turn-helix transcriptional regulator -
  I6G96_RS06510 (I6G96_06510) alr 1436221..1437324 (-) 1104 WP_034397810.1 alanine racemase -
  I6G96_RS06515 (I6G96_06515) lplT 1437459..1438760 (+) 1302 WP_013800185.1 lysophospholipid transporter LplT -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48168.75 Da        Isoelectric Point: 7.6673

>NTDB_id=512282 I6G96_RS06490 WP_043821911.1 1433198..1434583(-) (radA) [Delftia acidovorans strain FDAARGOS_939]
MAKDKTTFICNACGGTSPRWLGKCPACGAWNSLIEAVAEPASAGKNRLSQPQGYAGLANVQAVMPLSAIEAQDVARTPSG
IEELDRVLGGGIVEGGVVLIGGDPGIGKSTLLLQAMDALHRVGLPTLYVTGEESGAQVALRSRRLGLEASQVNVLAEIQL
EKILATMEATQPAVVVIDSIQTVYSDQLSSAPGSVAQVRECAAHLTRAAKTTGITVILVGHVTKEGALAGPRVLEHMVDT
VLYFEGDTHSNFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVTNPSAIFLSQHSEPVPGSCVLVTLEGTRPMLVEIQALVD
QGGPAPRRLSVGLDRDRLAMLLAVLSRHAGVACADQDVFVNAVGGVRISEPAADLAVMLSITSSLRGRALPKGFLAFGEV
GLAGEVRPAPRGQERLKEAAKLGFTMAVVPKANAPKKAIPGLTVHAVERVDEAMNIVRGMG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=512282 I6G96_RS06490 WP_043821911.1 1433198..1434583(-) (radA) [Delftia acidovorans strain FDAARGOS_939]
ATGGCCAAAGACAAAACCACGTTCATCTGCAATGCCTGCGGAGGCACCAGCCCGCGCTGGCTGGGCAAGTGCCCGGCCTG
CGGGGCCTGGAACTCGCTGATCGAGGCCGTTGCCGAGCCTGCGAGCGCGGGCAAGAACCGGCTCAGCCAGCCCCAGGGCT
ATGCGGGCCTGGCCAATGTCCAGGCCGTGATGCCGCTGTCGGCCATCGAGGCCCAGGACGTGGCGCGCACGCCCAGCGGC
ATCGAGGAGCTGGACCGCGTGCTGGGCGGCGGCATTGTCGAAGGCGGCGTGGTGCTGATTGGTGGCGATCCCGGCATCGG
CAAGTCCACACTGCTGCTGCAGGCCATGGATGCGCTGCACCGCGTCGGCCTGCCCACGCTGTATGTCACGGGCGAGGAAA
GCGGTGCCCAGGTCGCGCTGCGCTCGCGCCGCCTGGGGCTGGAGGCCAGCCAGGTCAACGTGCTGGCCGAGATCCAGCTG
GAGAAAATCCTCGCCACCATGGAGGCCACCCAGCCGGCCGTGGTCGTCATCGACTCCATACAGACCGTGTACTCGGACCA
GCTGTCCTCGGCGCCGGGCTCGGTGGCCCAGGTGCGCGAATGCGCGGCCCACCTCACGCGCGCGGCCAAGACCACGGGCA
TAACCGTGATCCTGGTCGGCCACGTGACCAAGGAAGGCGCACTGGCCGGGCCGCGCGTGCTGGAGCACATGGTGGACACG
GTGCTGTACTTCGAGGGCGACACGCACAGCAACTTCCGCCTGGTGCGCGCCATCAAGAACCGCTTTGGCGCCGTCAACGA
GATCGGCGTCTTCGCCATGACGGAGAAGGGCCTCAAGGGCGTAACCAACCCCAGCGCCATCTTCCTGTCCCAGCACAGCG
AGCCCGTGCCCGGCTCCTGCGTGCTGGTCACGCTGGAGGGCACGCGCCCCATGCTGGTGGAGATACAGGCCCTGGTCGAT
CAGGGCGGCCCCGCGCCCCGGCGCCTGTCCGTGGGCCTGGACCGCGACCGGCTGGCCATGCTGCTGGCCGTGCTCAGCCG
CCACGCGGGCGTGGCCTGCGCGGACCAGGATGTGTTCGTCAACGCCGTAGGCGGCGTGCGCATCAGCGAGCCTGCGGCCG
ACCTGGCCGTCATGCTGTCCATCACCTCCAGCCTGCGTGGCCGCGCCCTGCCCAAGGGATTCCTCGCCTTTGGCGAAGTG
GGCCTGGCCGGCGAAGTGCGCCCCGCACCGCGCGGCCAGGAGCGCCTGAAGGAAGCGGCCAAGCTGGGCTTCACCATGGC
CGTGGTACCGAAGGCCAATGCGCCCAAGAAGGCCATCCCGGGTCTGACCGTTCATGCCGTCGAACGCGTGGACGAGGCCA
TGAATATCGTCCGAGGGATGGGCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.904

98.915

0.484
  radA Streptococcus mitis NCTC 12261

47.368

98.915

0.469
  radA Streptococcus pneumoniae D39

48.19

95.879

0.462
  radA Streptococcus pneumoniae TIGR4

48.19

95.879

0.462
  radA Streptococcus pneumoniae R6

48.19

95.879

0.462
  radA Streptococcus pneumoniae Rx1

48.19

95.879

0.462
  radA Streptococcus mitis SK321

48.961

93.926

0.46