Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   I4W80_RS16555 Genome accession   NZ_CP065591
Coordinates   3206146..3206613 (-) Length   155 a.a.
NCBI ID   WP_017357863.1    Uniprot ID   -
Organism   Bacillus altitudinis strain 1817     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3201146..3211613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I4W80_RS16520 (I4W80_16520) fliW 3201282..3201716 (-) 435 WP_017357867.1 flagellar assembly protein FliW -
  I4W80_RS16525 (I4W80_16525) - 3201745..3202323 (-) 579 WP_017357866.1 DUF6470 family protein -
  I4W80_RS16530 (I4W80_16530) flgL 3202370..3203281 (-) 912 WP_008348257.1 flagellar hook-associated protein FlgL -
  I4W80_RS16535 (I4W80_16535) flgK 3203290..3204810 (-) 1521 WP_206115793.1 flagellar hook-associated protein FlgK -
  I4W80_RS16540 (I4W80_16540) - 3204826..3205308 (-) 483 WP_017357865.1 flagellar protein FlgN -
  I4W80_RS16545 (I4W80_16545) flgM 3205327..3205590 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  I4W80_RS16550 (I4W80_16550) - 3205670..3206089 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  I4W80_RS16555 (I4W80_16555) comFC 3206146..3206613 (-) 468 WP_017357863.1 ComF family protein Machinery gene
  I4W80_RS19360 - 3206665..3206868 (-) 204 Protein_3227 hypothetical protein -
  I4W80_RS16560 (I4W80_16560) - 3206829..3207122 (-) 294 WP_017357862.1 late competence development ComFB family protein -
  I4W80_RS16565 (I4W80_16565) comFA 3207187..3208566 (-) 1380 WP_139336407.1 DEAD/DEAH box helicase Machinery gene
  I4W80_RS16570 (I4W80_16570) - 3208686..3209528 (-) 843 WP_007499966.1 DegV family protein -
  I4W80_RS16575 (I4W80_16575) degU 3209740..3210429 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17753.91 Da        Isoelectric Point: 10.9207

>NTDB_id=512141 I4W80_RS16555 WP_017357863.1 3206146..3206613(-) (comFC) [Bacillus altitudinis strain 1817]
MNRSVYAYNDFMKDVLARFKFRGDTALADLFKKDVQSAFKRSFSIKEPVLVPIPLSKERLKERGFNQSMMLASMIGGPIL
EPLIKVHQRKQSKKRKNERLHQQKLFQLRQANPIVLKDIILIDDIYTTGATVYHAAKILKDAGAKSVSSFTLIRS

Nucleotide


Download         Length: 468 bp        

>NTDB_id=512141 I4W80_RS16555 WP_017357863.1 3206146..3206613(-) (comFC) [Bacillus altitudinis strain 1817]
ATGAATCGGTCTGTTTATGCTTACAACGACTTTATGAAAGATGTTCTAGCTCGATTTAAATTTCGAGGTGATACGGCTTT
AGCTGATCTATTTAAAAAAGATGTACAGTCAGCGTTTAAACGTTCTTTTTCAATCAAAGAACCGGTGCTTGTCCCAATTC
CTTTGAGTAAAGAGAGATTAAAGGAAAGAGGATTCAATCAGTCAATGATGCTTGCTTCCATGATTGGCGGACCTATATTG
GAGCCACTTATAAAAGTACATCAAAGGAAGCAGTCTAAGAAAAGAAAAAATGAACGTTTACATCAACAGAAGTTGTTTCA
ATTAAGGCAGGCAAACCCGATCGTTCTAAAGGATATCATATTAATCGATGATATTTATACAACTGGGGCGACAGTCTATC
ATGCAGCAAAAATTTTAAAAGACGCAGGCGCCAAAAGTGTTTCCTCTTTTACGTTGATTCGTAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(89-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

54.839

100

0.548
  comFC/cflB Streptococcus mitis NCTC 12261

41.83

98.71

0.413
  comFC/cflB Streptococcus mitis SK321

41.83

98.71

0.413
  comFC/cflB Streptococcus pneumoniae TIGR4

41.176

98.71

0.406
  comFC/cflB Streptococcus pneumoniae Rx1

41.176

98.71

0.406
  comFC/cflB Streptococcus pneumoniae D39

41.176

98.71

0.406
  comFC/cflB Streptococcus pneumoniae R6

41.176

98.71

0.406
  comFC Lactococcus lactis subsp. cremoris KW2

41.958

92.258

0.387