Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   I4W80_RS16565 Genome accession   NZ_CP065591
Coordinates   3207187..3208566 (-) Length   459 a.a.
NCBI ID   WP_139336407.1    Uniprot ID   -
Organism   Bacillus altitudinis strain 1817     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3202187..3213566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I4W80_RS16530 (I4W80_16530) flgL 3202370..3203281 (-) 912 WP_008348257.1 flagellar hook-associated protein FlgL -
  I4W80_RS16535 (I4W80_16535) flgK 3203290..3204810 (-) 1521 WP_206115793.1 flagellar hook-associated protein FlgK -
  I4W80_RS16540 (I4W80_16540) - 3204826..3205308 (-) 483 WP_017357865.1 flagellar protein FlgN -
  I4W80_RS16545 (I4W80_16545) flgM 3205327..3205590 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  I4W80_RS16550 (I4W80_16550) - 3205670..3206089 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  I4W80_RS16555 (I4W80_16555) comFC 3206146..3206613 (-) 468 WP_017357863.1 ComF family protein Machinery gene
  I4W80_RS19360 - 3206665..3206868 (-) 204 Protein_3227 hypothetical protein -
  I4W80_RS16560 (I4W80_16560) - 3206829..3207122 (-) 294 WP_017357862.1 late competence development ComFB family protein -
  I4W80_RS16565 (I4W80_16565) comFA 3207187..3208566 (-) 1380 WP_139336407.1 DEAD/DEAH box helicase Machinery gene
  I4W80_RS16570 (I4W80_16570) - 3208686..3209528 (-) 843 WP_007499966.1 DegV family protein -
  I4W80_RS16575 (I4W80_16575) degU 3209740..3210429 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  I4W80_RS16580 (I4W80_16580) degS 3210494..3211669 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  I4W80_RS16585 (I4W80_16585) - 3211891..3212559 (+) 669 WP_017357860.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52538.14 Da        Isoelectric Point: 9.9737

>NTDB_id=512142 I4W80_RS16565 WP_139336407.1 3207187..3208566(-) (comFA) [Bacillus altitudinis strain 1817]
MNLEKAMELSHKLQSRHLLPVECQCTQSELEWLENQGFIHRTPAVDRVASGLICCRCGVSNKRYFALSPCETCKKDCVYC
RSCIMLGKVSECGFLYEWTGPQKKETRQVELTWQGELSKGQKRASDRLVEAIQNKFDLLVWAVCGAGKTEVLFHGIKYAL
NNGMSVCIATPRTDVVLELEPRMRKAFQGLNIAALYGGSSQRFQMAPLMIATTHQLMRYKNAFDVLIVDEVDAFPYSIDE
RLQFAVLKSMKKTGVRIYLSATPSKKMQKDVARRQLEAIKIPLRFHQKPLPVPTFQWVGDWKKRLKRNRLPASTMNWLHE
HITKKKRVLLFVPSISTMKKVTHILQVQDVNVQGVSADDQERKQKVQHFRDHRYDVLVTTTILERGVTIQDVQVGVLGAE
SPIFTESALVQISGRAGRHPDFFNGDVYFFHFGLTRSMKQAKKHIVKMNNTAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=512142 I4W80_RS16565 WP_139336407.1 3207187..3208566(-) (comFA) [Bacillus altitudinis strain 1817]
TTGAATCTGGAAAAAGCAATGGAACTCAGTCACAAGCTACAATCAAGGCACCTTCTTCCTGTTGAATGTCAATGTACACA
GTCCGAATTGGAGTGGCTGGAGAATCAAGGATTTATCCATAGAACACCTGCAGTCGATAGGGTGGCGAGTGGTTTGATCT
GCTGCCGGTGCGGTGTATCAAACAAGCGCTACTTTGCCCTCTCTCCGTGTGAAACATGTAAAAAAGACTGTGTATACTGT
AGATCCTGCATCATGCTGGGAAAAGTAAGCGAATGTGGCTTTCTCTACGAATGGACGGGTCCACAAAAGAAAGAAACAAG
ACAAGTTGAATTAACATGGCAGGGAGAGCTTTCTAAAGGGCAAAAGAGAGCGTCCGATAGGCTAGTAGAAGCAATCCAAA
ACAAATTTGATCTGCTCGTTTGGGCTGTTTGTGGTGCGGGGAAAACGGAGGTGCTTTTTCATGGAATAAAATATGCGCTA
AATAACGGAATGAGTGTTTGTATTGCGACGCCTAGAACCGATGTTGTACTTGAGCTTGAACCTCGAATGAGAAAGGCATT
TCAAGGACTGAATATAGCTGCACTTTATGGCGGGAGTTCTCAAAGATTTCAAATGGCGCCGCTTATGATCGCTACAACCC
ATCAGCTAATGAGATATAAAAACGCCTTTGATGTCCTCATTGTAGACGAAGTCGATGCTTTTCCTTATTCAATCGATGAA
CGGCTTCAGTTTGCTGTTTTAAAGTCAATGAAAAAAACAGGAGTTAGAATTTACTTAAGTGCCACACCATCTAAAAAAAT
GCAAAAAGATGTTGCTCGTAGACAATTAGAAGCGATCAAAATTCCTCTGCGCTTCCACCAAAAACCGTTACCTGTCCCAA
CATTTCAATGGGTTGGAGATTGGAAAAAGAGATTAAAAAGAAATCGGCTTCCAGCATCTACAATGAACTGGCTGCATGAA
CATATCACAAAGAAAAAAAGAGTGTTACTCTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACTCATATTCTTCAAGT
TCAAGATGTAAATGTACAGGGTGTTTCTGCGGATGATCAAGAAAGGAAGCAAAAAGTCCAGCATTTCAGAGATCATAGAT
ACGATGTATTGGTTACAACAACTATTCTAGAAAGAGGCGTTACCATTCAAGATGTTCAAGTGGGCGTATTAGGTGCGGAA
TCTCCTATTTTTACAGAAAGTGCACTTGTTCAAATTTCTGGTAGAGCAGGGAGACATCCAGATTTTTTTAACGGAGACGT
GTACTTTTTTCATTTTGGCTTAACGAGAAGTATGAAACAAGCAAAGAAACATATCGTAAAAATGAATAATACAGCTGAAA
AAGAGTTTTCTGAAAAATAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(320-419)

Type III restriction enzyme, res subunit (ResIII)

(116-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

51.902

97.386

0.505