Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   I4W80_RS16580 Genome accession   NZ_CP065591
Coordinates   3210494..3211669 (-) Length   391 a.a.
NCBI ID   WP_003213166.1    Uniprot ID   -
Organism   Bacillus altitudinis strain 1817     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3205494..3216669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I4W80_RS16550 (I4W80_16550) - 3205670..3206089 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  I4W80_RS16555 (I4W80_16555) comFC 3206146..3206613 (-) 468 WP_017357863.1 ComF family protein Machinery gene
  I4W80_RS19360 - 3206665..3206868 (-) 204 Protein_3227 hypothetical protein -
  I4W80_RS16560 (I4W80_16560) - 3206829..3207122 (-) 294 WP_017357862.1 late competence development ComFB family protein -
  I4W80_RS16565 (I4W80_16565) comFA 3207187..3208566 (-) 1380 WP_139336407.1 DEAD/DEAH box helicase Machinery gene
  I4W80_RS16570 (I4W80_16570) - 3208686..3209528 (-) 843 WP_007499966.1 DegV family protein -
  I4W80_RS16575 (I4W80_16575) degU 3209740..3210429 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  I4W80_RS16580 (I4W80_16580) degS 3210494..3211669 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  I4W80_RS16585 (I4W80_16585) - 3211891..3212559 (+) 669 WP_017357860.1 YigZ family protein -
  I4W80_RS16590 (I4W80_16590) - 3212544..3213641 (+) 1098 WP_007499958.1 LCP family protein -
  I4W80_RS16595 (I4W80_16595) - 3213679..3214746 (-) 1068 WP_024719245.1 glycosyltransferase family 4 protein -
  I4W80_RS16600 (I4W80_16600) tuaH 3214881..3216128 (-) 1248 WP_017357859.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 45523.25 Da        Isoelectric Point: 5.8757

>NTDB_id=512144 I4W80_RS16580 WP_003213166.1 3210494..3211669(-) (degS) [Bacillus altitudinis strain 1817]
MTTPKMDPKLLDSIIMKMLSTVDGSKDEVFRIGEQSRQQYESLVEELKQIKQQVNEVIDFGDKLEVHTRHARNRLSEVSR
NFNKFSEEEIREAYEKAHNLQVELTMIQQREKQLRERRDDLERRLLSLQDVIERSETLVSQITVVLNYLNQDLRQVGVLL
EDAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEEGFKEIRSLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLNTIEEYDGKTKITFQCLGDTESERIASQFEVALFRLAQEAVTNSLKHSEAEEISVKVEV
TKDFVTLIIKDDGKGFDMKDVKTNKNKSFGLLGMKERVDLLEGKMTIDSKIGLGTFIMIRVPLTLQNKIVK

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=512144 I4W80_RS16580 WP_003213166.1 3210494..3211669(-) (degS) [Bacillus altitudinis strain 1817]
ATGACAACACCTAAAATGGATCCGAAGTTATTGGATTCAATCATCATGAAAATGCTAAGTACAGTTGATGGCAGTAAGGA
CGAAGTATTTAGAATCGGCGAACAGTCCCGTCAACAATATGAAAGCCTAGTAGAAGAGCTTAAGCAAATTAAACAGCAAG
TCAACGAAGTAATTGATTTTGGGGATAAACTAGAAGTACATACGAGACATGCTAGAAATCGATTATCTGAGGTCAGCAGA
AACTTCAACAAATTCAGCGAAGAAGAAATACGAGAAGCCTATGAAAAAGCACATAACCTGCAAGTAGAATTGACCATGAT
CCAGCAGCGCGAAAAACAGCTGAGGGAAAGAAGAGATGATCTCGAAAGACGATTGTTAAGCTTACAAGACGTCATTGAAC
GTTCAGAAACGCTTGTGAGCCAGATTACGGTCGTCCTCAACTACTTGAACCAAGATTTACGTCAGGTCGGTGTTTTACTT
GAAGATGCTCAGGCAAAACAAGATTTTGGACTAAGAATTATTGAAGCCCAGGAAGAAGAGCGCAAAAGGGTATCACGAGA
AATCCATGATGGACCTGCTCAGATGCTGGCAAACGTGATGATGCGTTCAGAACTAATAGAACGGATTTTTAGAGACCGTG
GAACAGAAGAAGGCTTTAAAGAAATTAGAAGTCTAAGACAGAATGTGCGAAATGCACTGTACGAAGTGAGAAGAATCATT
TATGATTTAAGACCAATGGCTTTAGATGATTTGGGTCTCATTCCGACACTGCGAAAATACTTAAACACAATTGAAGAATA
TGATGGAAAAACCAAAATTACGTTCCAGTGCTTAGGTGATACTGAAAGCGAAAGAATTGCTTCTCAATTTGAAGTGGCAC
TATTTAGACTAGCTCAAGAAGCTGTCACAAATTCTTTAAAGCATTCTGAAGCTGAAGAAATCTCTGTGAAGGTTGAAGTG
ACGAAAGACTTTGTCACCTTAATTATCAAAGACGATGGAAAAGGCTTTGATATGAAGGATGTTAAAACAAATAAAAACAA
ATCCTTTGGGTTACTTGGTATGAAAGAGCGCGTAGACTTACTAGAAGGTAAAATGACCATAGACTCAAAAATAGGTCTAG
GGACATTCATCATGATTAGAGTACCGTTAACATTACAAAATAAAATTGTAAAATAG

Domains

Predicted by InterproScan.

Sensor protein DegS (DegS)

(12-170)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

85.455

98.465

0.841