Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   I4W80_RS16575 Genome accession   NZ_CP065591
Coordinates   3209740..3210429 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus altitudinis strain 1817     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3204740..3215429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I4W80_RS16540 (I4W80_16540) - 3204826..3205308 (-) 483 WP_017357865.1 flagellar protein FlgN -
  I4W80_RS16545 (I4W80_16545) flgM 3205327..3205590 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  I4W80_RS16550 (I4W80_16550) - 3205670..3206089 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  I4W80_RS16555 (I4W80_16555) comFC 3206146..3206613 (-) 468 WP_017357863.1 ComF family protein Machinery gene
  I4W80_RS19360 - 3206665..3206868 (-) 204 Protein_3227 hypothetical protein -
  I4W80_RS16560 (I4W80_16560) - 3206829..3207122 (-) 294 WP_017357862.1 late competence development ComFB family protein -
  I4W80_RS16565 (I4W80_16565) comFA 3207187..3208566 (-) 1380 WP_139336407.1 DEAD/DEAH box helicase Machinery gene
  I4W80_RS16570 (I4W80_16570) - 3208686..3209528 (-) 843 WP_007499966.1 DegV family protein -
  I4W80_RS16575 (I4W80_16575) degU 3209740..3210429 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  I4W80_RS16580 (I4W80_16580) degS 3210494..3211669 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  I4W80_RS16585 (I4W80_16585) - 3211891..3212559 (+) 669 WP_017357860.1 YigZ family protein -
  I4W80_RS16590 (I4W80_16590) - 3212544..3213641 (+) 1098 WP_007499958.1 LCP family protein -
  I4W80_RS16595 (I4W80_16595) - 3213679..3214746 (-) 1068 WP_024719245.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=512143 I4W80_RS16575 WP_008348273.1 3209740..3210429(-) (degU) [Bacillus altitudinis strain 1817]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=512143 I4W80_RS16575 WP_008348273.1 3209740..3210429(-) (degU) [Bacillus altitudinis strain 1817]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCCTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAATGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996