Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   I4Q39_RS13425 Genome accession   NZ_CP065535
Coordinates   2798012..2799259 (-) Length   415 a.a.
NCBI ID   WP_025481399.1    Uniprot ID   -
Organism   Enterococcus durans strain KCTC 13289     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 2793012..2804259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I4Q39_RS13410 (I4Q39_13410) proC 2794105..2794908 (+) 804 WP_005875119.1 pyrroline-5-carboxylate reductase -
  I4Q39_RS13415 (I4Q39_13415) rny 2794943..2796499 (-) 1557 WP_005875117.1 ribonuclease Y -
  I4Q39_RS13420 (I4Q39_13420) recA 2796867..2797907 (-) 1041 WP_005875116.1 recombinase RecA Machinery gene
  I4Q39_RS13425 (I4Q39_13425) cinA 2798012..2799259 (-) 1248 WP_025481399.1 competence/damage-inducible protein A Machinery gene
  I4Q39_RS13430 (I4Q39_13430) pgsA 2799583..2800161 (-) 579 WP_005875113.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  I4Q39_RS13435 (I4Q39_13435) - 2800707..2801594 (-) 888 WP_016177765.1 RodZ domain-containing protein -
  I4Q39_RS13440 (I4Q39_13440) yfmH 2801826..2803118 (-) 1293 WP_005875110.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 46019.54 Da        Isoelectric Point: 4.8830

>NTDB_id=511724 I4Q39_RS13425 WP_025481399.1 2798012..2799259(-) (cinA) [Enterococcus durans strain KCTC 13289]
MKSEIIAVGTELLLGQVVNTNATFLSEQLADLGIDVYYQTVVGDNPTRLEELIQLAETRSELIILCGGLGPTEDDLTKEV
TAKHLGRELIQNTEGYKKLLTFFETTKRKMTENNLQQSQIIEGGIPLPNRTGLALGTFFQTEDHVYILLPGPPSELKPMF
IEQARPLLEEKFPSEEKLISKVLRFYGIGESRLVTELKDLIETQINPTIAPYAKPNEVTLRLTVKTKDAHAGNQALLALE
ERIQERVGEYFYGYGDDNSLPKVVVDLLKERNQTITAAESLTAGAFQAALGDIPGVSAVFPGGFTTYSLETKANFLTIDR
HFLEKYGTVSQECAEQMALQARKLAGTDYGISFTGVAGPDELEGQPVGTVWIALAYGDEAVISQKYRFTRDRAAIRHSAV
MQGFDLLRRQVLRKK

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=511724 I4Q39_RS13425 WP_025481399.1 2798012..2799259(-) (cinA) [Enterococcus durans strain KCTC 13289]
ATGAAATCAGAAATTATTGCCGTAGGAACAGAGCTTTTATTAGGGCAAGTTGTCAATACCAACGCGACATTTTTATCAGA
ACAATTAGCAGATCTTGGGATCGACGTCTATTATCAAACAGTTGTGGGAGATAATCCTACACGTTTAGAAGAGTTGATTC
AGTTAGCAGAAACGAGAAGTGAATTGATCATTTTGTGTGGTGGATTAGGACCGACAGAAGATGATCTAACAAAAGAAGTG
ACAGCAAAGCATCTTGGTAGAGAACTAATTCAAAATACAGAAGGATATAAAAAATTATTGACCTTTTTTGAAACAACGAA
ACGAAAGATGACAGAAAACAATTTGCAACAATCACAAATCATCGAAGGGGGAATCCCGCTACCCAATCGTACTGGTCTAG
CCTTGGGTACATTTTTCCAAACAGAAGATCATGTGTATATCTTACTACCGGGTCCGCCAAGCGAATTAAAACCAATGTTC
ATCGAACAAGCGCGTCCGCTATTGGAAGAAAAATTTCCATCAGAAGAAAAATTGATTTCAAAAGTGCTAAGGTTTTATGG
TATTGGTGAGTCACGTCTAGTAACAGAATTAAAAGATTTGATCGAAACACAGATCAATCCAACGATCGCACCTTATGCAA
AACCCAACGAGGTCACTTTGCGATTAACTGTAAAAACCAAGGATGCACATGCAGGAAATCAAGCATTACTAGCTTTAGAA
GAAAGAATCCAAGAACGAGTTGGCGAGTATTTTTATGGCTACGGGGATGACAATTCTCTGCCAAAAGTTGTCGTGGATCT
CTTAAAAGAAAGGAACCAAACGATCACTGCGGCGGAAAGTTTGACCGCAGGAGCTTTTCAAGCTGCATTAGGAGATATCC
CAGGTGTATCTGCCGTCTTTCCTGGTGGTTTTACGACGTATTCGTTAGAAACAAAAGCAAATTTTTTAACGATTGATCGC
CACTTTTTAGAAAAATATGGAACAGTTAGTCAAGAATGTGCGGAGCAAATGGCTCTTCAAGCAAGAAAACTAGCAGGAAC
AGATTACGGGATTTCTTTCACTGGAGTAGCTGGACCAGATGAACTCGAAGGACAGCCCGTTGGGACGGTTTGGATTGCGT
TAGCGTATGGAGACGAAGCAGTCATTTCACAGAAATATCGATTCACGAGAGACCGCGCAGCGATAAGACACAGCGCAGTA
ATGCAAGGATTTGATCTGTTAAGAAGACAAGTATTAAGAAAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

53.11

100

0.535
  cinA Streptococcus pneumoniae TIGR4

52.857

100

0.535
  cinA Streptococcus pneumoniae Rx1

52.619

100

0.533
  cinA Streptococcus pneumoniae R6

52.619

100

0.533
  cinA Streptococcus mitis SK321

52.619

100

0.533
  cinA Streptococcus pneumoniae D39

52.619

100

0.533
  cinA Streptococcus mitis NCTC 12261

52.143

100

0.528
  cinA Bacillus subtilis subsp. subtilis str. 168

49.758

99.759

0.496
  cinA Streptococcus suis isolate S10

43.705

100

0.443