Detailed information NTG0511283

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: STT55_RS08940
• Genome accession: NZ_CP065502
• Coordinates: 1718517..1718945 (-)
• Length: 142 a.a.
• NCBI ID: WP_011226626.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain ST55
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1713517..1723945

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STT55_RS08900 (STT55_08830)	-	1713654..1714097 (-)	444	WP_002946118.1	hypothetical protein	-
STT55_RS08905	-	1714171..1714509 (-)	339	WP_224103197.1	CPBP family intramembrane glutamic endopeptidase	-
STT55_RS08910 (STT55_08840)	-	1714840..1715037 (-)	198	WP_002885716.1	helix-turn-helix transcriptional regulator	-
STT55_RS08915 (STT55_08845)	-	1715286..1716479 (-)	1194	WP_022096898.1	acetate kinase	-
STT55_RS08920 (STT55_08850)	comYH	1716535..1717491 (-)	957	WP_173940669.1	class I SAM-dependent methyltransferase	Machinery gene
STT55_RS08925 (STT55_08855)	comGG	1717536..1717853 (-)	318	WP_141326604.1	competence type IV pilus minor pilin ComGG	-
STT55_RS08930 (STT55_08860)	comYF	1717831..1718268 (-)	438	WP_022096897.1	competence type IV pilus minor pilin ComGF	Machinery gene
STT55_RS08935 (STT55_08865)	comGE	1718252..1718545 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
STT55_RS08940 (STT55_08870)	comYD	1718517..1718945 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
STT55_RS08945 (STT55_08875)	comYC	1718905..1719231 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
STT55_RS08950 (STT55_08880)	comYB	1719228..1720328 (-)	1101	WP_116920398.1	competence type IV pilus assembly protein ComGB	Machinery gene
STT55_RS08955 (STT55_08885)	comGA/cglA/cilD	1720210..1721151 (-)	942	WP_022096896.1	competence type IV pilus ATPase ComGA	Machinery gene
STT55_RS08960 (STT55_08890)	-	1721232..1721594 (-)	363	WP_173940670.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15859.45 Da
• Isoelectric Point: 10.3330

>NTDB_id=511283 STT55_RS08940 WP_011226626.1 1718517..1718945(-) (comYD) [Streptococcus thermophilus strain ST55]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTKD
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide

• Length: 429 bp

>NTDB_id=511283 STT55_RS08940 WP_011226626.1 1718517..1718945(-) (comYD) [Streptococcus thermophilus strain ST55]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACACTAGCAGT
GGTTGTATTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCAGCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGGAT
AAGGTTAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCTAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	52.672	92.254	0.486
comYD	Streptococcus mutans UA159	52.672	92.254	0.486
comYD	Streptococcus gordonii str. Challis substr. CH1	41.429	98.592	0.408
comGD/cglD	Streptococcus pneumoniae Rx1	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae D39	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae R6	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis NCTC 12261	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae TIGR4	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis SK321	43.307	89.437	0.387
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38