Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   STT55_RS08920 Genome accession   NZ_CP065502
Coordinates   1716535..1717491 (-) Length   318 a.a.
NCBI ID   WP_173940669.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST55     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1711535..1722491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STT55_RS08890 (STT55_08820) proC 1712089..1712859 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -
  STT55_RS08895 (STT55_08825) - 1712889..1713551 (-) 663 WP_002946116.1 type II CAAX endopeptidase family protein -
  STT55_RS08900 (STT55_08830) - 1713654..1714097 (-) 444 WP_002946118.1 hypothetical protein -
  STT55_RS08905 - 1714171..1714509 (-) 339 WP_224103197.1 CPBP family intramembrane glutamic endopeptidase -
  STT55_RS08910 (STT55_08840) - 1714840..1715037 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  STT55_RS08915 (STT55_08845) - 1715286..1716479 (-) 1194 WP_022096898.1 acetate kinase -
  STT55_RS08920 (STT55_08850) comYH 1716535..1717491 (-) 957 WP_173940669.1 class I SAM-dependent methyltransferase Machinery gene
  STT55_RS08925 (STT55_08855) comGG 1717536..1717853 (-) 318 WP_141326604.1 competence type IV pilus minor pilin ComGG -
  STT55_RS08930 (STT55_08860) comYF 1717831..1718268 (-) 438 WP_022096897.1 competence type IV pilus minor pilin ComGF Machinery gene
  STT55_RS08935 (STT55_08865) comGE 1718252..1718545 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  STT55_RS08940 (STT55_08870) comYD 1718517..1718945 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  STT55_RS08945 (STT55_08875) comYC 1718905..1719231 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  STT55_RS08950 (STT55_08880) comYB 1719228..1720328 (-) 1101 WP_116920398.1 competence type IV pilus assembly protein ComGB Machinery gene
  STT55_RS08955 (STT55_08885) comGA/cglA/cilD 1720210..1721151 (-) 942 WP_022096896.1 competence type IV pilus ATPase ComGA Machinery gene
  STT55_RS08960 (STT55_08890) - 1721232..1721594 (-) 363 WP_173940670.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35887.03 Da        Isoelectric Point: 4.7123

>NTDB_id=511281 STT55_RS08920 WP_173940669.1 1716535..1717491(-) (comYH) [Streptococcus thermophilus strain ST55]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVTNELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=511281 STT55_RS08920 WP_173940669.1 1716535..1717491(-) (comYH) [Streptococcus thermophilus strain ST55]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTACTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAATATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.571

99.057

0.679
  comYH Streptococcus mutans UA140

68.571

99.057

0.679