Detailed information NTG0511285

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: STT55_RS08950
• Genome accession: NZ_CP065502
• Coordinates: 1719228..1720328 (-)
• Length: 366 a.a.
• NCBI ID: WP_116920398.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain ST55
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1714228..1725328

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STT55_RS08910 (STT55_08840)	-	1714840..1715037 (-)	198	WP_002885716.1	helix-turn-helix transcriptional regulator	-
STT55_RS08915 (STT55_08845)	-	1715286..1716479 (-)	1194	WP_022096898.1	acetate kinase	-
STT55_RS08920 (STT55_08850)	comYH	1716535..1717491 (-)	957	WP_173940669.1	class I SAM-dependent methyltransferase	Machinery gene
STT55_RS08925 (STT55_08855)	comGG	1717536..1717853 (-)	318	WP_141326604.1	competence type IV pilus minor pilin ComGG	-
STT55_RS08930 (STT55_08860)	comYF	1717831..1718268 (-)	438	WP_022096897.1	competence type IV pilus minor pilin ComGF	Machinery gene
STT55_RS08935 (STT55_08865)	comGE	1718252..1718545 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
STT55_RS08940 (STT55_08870)	comYD	1718517..1718945 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
STT55_RS08945 (STT55_08875)	comYC	1718905..1719231 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
STT55_RS08950 (STT55_08880)	comYB	1719228..1720328 (-)	1101	WP_116920398.1	competence type IV pilus assembly protein ComGB	Machinery gene
STT55_RS08955 (STT55_08885)	comGA/cglA/cilD	1720210..1721151 (-)	942	WP_022096896.1	competence type IV pilus ATPase ComGA	Machinery gene
STT55_RS08960 (STT55_08890)	-	1721232..1721594 (-)	363	WP_173940670.1	DUF1033 family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 41797.91 Da
• Isoelectric Point: 10.1084

>NTDB_id=511285 STT55_RS08950 WP_116920398.1 1719228..1720328(-) (comYB) [Streptococcus thermophilus strain ST55]
MPEKISKTIRRPTGISSWKVWLNKDVSLRGISKGKKLKISQQVKVIQLFKQLLKAGFTLTEIVAFLERSHLLKEASLSLM
KESLIRGDRLDQMLALVGFSDNIVTQISLADKHGNLLGSLTKIETYMLRMTKVRKKLMEVATYPILLLGFLILIMLGLKN
YLLPQLLEGDGKNNWAVQLVQIFPQLFFVSLCGLLVLGLILYLWVKRQSALVFYRRMAKIPFIGQTVRLYTTAYYAREWG
NLLGQGVDLLDLVALMQEQKSKLFRELGADLEEALMLGQSFPERIASHPFFTKELSLIIAYGEANARLGYELEVYAEEVW
QNFFNRLNKATTFVQPLIFVIVAVVIVMIYVAMLLPMYQNMEGMMS

Nucleotide

• Length: 1101 bp

>NTDB_id=511285 STT55_RS08950 WP_116920398.1 1719228..1720328(-) (comYB) [Streptococcus thermophilus strain ST55]
TTGCCAGAGAAAATTTCCAAAACCATTCGTCGACCAACTGGAATCAGCAGTTGGAAGGTTTGGTTAAACAAGGATGTCTC
ACTGAGAGGGATATCCAAGGGGAAAAAATTAAAGATTAGTCAGCAAGTTAAGGTTATCCAGCTCTTCAAACAACTTTTAA
AGGCCGGTTTTACCTTAACTGAAATCGTAGCCTTTTTGGAGCGAAGTCACTTGCTGAAAGAAGCATCCTTGTCTCTTATG
AAAGAGAGTTTAATACGCGGTGATAGGTTGGATCAGATGTTAGCGTTAGTGGGGTTTTCGGACAATATTGTTACTCAGAT
TTCTCTTGCTGACAAGCACGGTAATCTTCTAGGGAGTCTAACAAAGATTGAAACCTATATGCTTCGTATGACAAAGGTTC
GCAAGAAACTCATGGAGGTGGCGACTTATCCCATACTACTTCTGGGTTTTCTGATTCTGATTATGCTAGGACTTAAAAAT
TATCTTCTACCCCAACTCTTAGAGGGTGATGGTAAGAATAATTGGGCTGTACAGTTGGTTCAAATTTTTCCCCAGCTTTT
TTTTGTGAGTTTGTGTGGACTCCTTGTGTTGGGTTTAATTCTCTATCTATGGGTGAAACGACAGTCAGCCCTTGTTTTTT
ATAGGCGAATGGCCAAAATCCCTTTTATTGGTCAGACAGTAAGGCTTTACACGACCGCCTATTATGCTAGGGAATGGGGA
AATTTATTAGGTCAAGGCGTTGATTTGCTAGATTTGGTGGCTCTTATGCAAGAGCAAAAGTCTAAACTCTTCCGTGAGCT
GGGAGCCGATTTGGAAGAAGCCCTGATGCTGGGACAGAGTTTTCCTGAACGTATTGCCAGTCATCCGTTTTTTACTAAGG
AGCTCTCACTAATTATTGCTTATGGGGAGGCCAATGCGAGGTTGGGCTATGAGTTGGAAGTTTATGCCGAGGAGGTTTGG
CAAAACTTCTTTAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCCCTCATTTTTGTTATTGTTGCAGTTGTGATTGT
AATGATCTATGTAGCCATGCTATTACCAATGTATCAAAATATGGAAGGAATGATGTCATGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (236-356)

• Type II secretion system (T2SS), protein F (T2SSF) (51-164)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	54.678	93.443	0.511
comYB	Streptococcus mutans UA159	54.678	93.443	0.511
comYB	Streptococcus gordonii str. Challis substr. CH1	51.17	93.443	0.478
comGB/cglB	Streptococcus mitis NCTC 12261	50.453	90.437	0.456
comGB/cglB	Streptococcus mitis SK321	49.697	90.164	0.448
comGB/cglB	Streptococcus pneumoniae Rx1	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae D39	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae R6	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae TIGR4	49.695	89.617	0.445
comGB	Lactococcus lactis subsp. cremoris KW2	45.758	90.164	0.413