Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SPAF_RS02785 Genome accession   NC_017905
Coordinates   544942..546927 (+) Length   661 a.a.
NCBI ID   WP_003015523.1    Uniprot ID   I2NQR7
Organism   Streptococcus parasanguinis FW213     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 539942..551927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPAF_RS02765 (Spaf_0525) - 540348..541574 (+) 1227 WP_014712954.1 cysteine desulfurase -
  SPAF_RS02770 (Spaf_0526) sufU 541561..541995 (+) 435 WP_013904704.1 Fe-S cluster assembly sulfur transfer protein SufU -
  SPAF_RS02775 (Spaf_0527) sufB 542028..543440 (+) 1413 WP_003015477.1 Fe-S cluster assembly protein SufB -
  SPAF_RS02780 (Spaf_0528) - 543496..544737 (-) 1242 WP_014712956.1 serine hydrolase -
  SPAF_RS02785 (Spaf_0529) amiA3 544942..546927 (+) 1986 WP_003015523.1 peptide ABC transporter substrate-binding protein Regulator
  SPAF_RS02790 (Spaf_0530) amiC 547001..548500 (+) 1500 WP_014712957.1 ABC transporter permease Regulator
  SPAF_RS02795 (Spaf_0531) amiD 548500..549426 (+) 927 WP_003010290.1 oligopeptide ABC transporter permease OppC Regulator
  SPAF_RS02800 (Spaf_0532) amiE 549438..550505 (+) 1068 WP_014712958.1 ABC transporter ATP-binding protein Regulator
  SPAF_RS02805 (Spaf_0533) amiF 550516..551442 (+) 927 WP_041826241.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 72393.80 Da        Isoelectric Point: 5.4956

>NTDB_id=51117 SPAF_RS02785 WP_003015523.1 544942..546927(+) (amiA3) [Streptococcus parasanguinis FW213]
MKKGKVFAVAGVTLLAAGLLAACSGSNTSKASSGEDKNYGYVYSDDPQTLDYTVSSKAATHDITTNVVDGLMANDKYGNL
VPSLAEDWSVSKDGLTYTYKIRKGVKWYDADGEEHGEVTAKDFVTGLKHAADKKSETLPLVQGSIKGLDDYVQGKITDFS
QVGVKAVDDYTLEYTLNKPETFWNSKTTNGILFPISTEFLKSKGDDFGQPNDVKSILANGPFLLKSITSKSSVVFEKNDN
YWDKKNVHLKEVKLTYYDGSDQDSLARGFSDGAYTVARLFPASSNFATISKKYKDNIYNTPAGSGVAVLGFNIDRQSYKH
TAKKSDAEKAATKKAILNKDFRQAITFALDRESYSAQLNSKEFAKPAIRNTYTAPAFVQVNGKDFGDVVADKLTTYGDQW
KGINLADGQDGLYNKDKAKAQLEKAKAELQKDGVQFPIHIDVPVAQSSKGFVARMQSLKQTVEDTLGKDNVVLDLQMMDQ
DEVLNITLNVPSAADADWDLQGLVGWNPDYDDPSTYLDTLQPSSEDQTKVYLGFAGGVDNASAKAVGLDEYAKLLADANS
ESLDVTKRYEKYATAQAWLSDSALVIPTMSSTGAATVISKVVPFSGPSSQTGNKGSSYFKYVEVQDEPVTKKQYEQAREK
WQKEKAESNKKAQQDLEKHVK

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=51117 SPAF_RS02785 WP_003015523.1 544942..546927(+) (amiA3) [Streptococcus parasanguinis FW213]
ATGAAAAAAGGTAAAGTATTCGCGGTTGCTGGAGTAACACTCCTTGCGGCTGGATTGTTGGCTGCATGTTCTGGTTCAAA
CACTAGCAAAGCAAGCTCAGGTGAAGACAAAAACTATGGTTATGTTTACTCAGATGATCCTCAAACTTTGGACTACACAG
TATCTTCTAAAGCTGCTACACATGATATCACTACAAATGTTGTAGATGGTTTGATGGCAAATGACAAGTATGGTAATCTC
GTACCATCACTTGCGGAAGATTGGTCTGTTTCAAAAGACGGTTTGACTTATACCTACAAGATTCGTAAAGGGGTTAAATG
GTACGATGCAGACGGTGAAGAACACGGTGAAGTTACAGCCAAGGACTTCGTGACAGGCTTGAAACACGCTGCTGATAAAA
AATCTGAAACTCTTCCACTAGTTCAAGGATCTATCAAAGGCTTGGATGATTATGTTCAAGGGAAAATCACAGACTTTAGC
CAAGTTGGTGTCAAAGCTGTTGATGATTACACACTTGAGTATACATTGAATAAACCAGAAACTTTCTGGAATTCTAAAAC
TACAAACGGAATTTTGTTCCCAATTAGCACAGAGTTCTTGAAGAGTAAGGGTGATGATTTTGGTCAACCAAACGATGTGA
AATCAATCCTTGCAAATGGACCATTCCTTCTTAAATCTATTACTTCAAAATCATCTGTTGTATTTGAAAAAAACGACAAT
TACTGGGATAAGAAAAACGTTCACCTTAAAGAAGTGAAACTTACTTACTACGATGGATCAGACCAAGATTCATTGGCACG
TGGCTTCTCTGATGGGGCTTATACAGTTGCTCGTTTGTTCCCTGCAAGTTCAAACTTTGCAACTATTTCGAAAAAATACA
AAGACAATATCTACAATACACCAGCTGGTTCAGGTGTAGCGGTCCTTGGTTTCAACATCGACCGTCAATCATACAAACAC
ACTGCTAAAAAATCAGATGCTGAAAAGGCTGCGACTAAGAAAGCAATCTTGAACAAAGATTTCCGTCAAGCAATTACCTT
TGCGTTAGACCGTGAAAGCTATTCTGCACAGCTAAATAGTAAAGAATTTGCTAAACCAGCTATCCGTAATACCTACACAG
CTCCAGCCTTTGTGCAAGTAAATGGAAAAGATTTTGGAGATGTAGTTGCCGATAAGTTGACTACTTATGGAGACCAATGG
AAGGGTATCAACCTTGCAGATGGTCAAGACGGTCTTTACAATAAAGACAAAGCCAAAGCCCAACTTGAAAAAGCGAAAGC
TGAACTTCAAAAAGATGGCGTTCAATTCCCGATTCATATTGATGTACCAGTAGCACAAAGCTCAAAAGGATTTGTTGCTC
GTATGCAATCTTTGAAACAAACAGTGGAAGACACTCTTGGTAAAGACAATGTTGTTCTTGATCTTCAAATGATGGACCAA
GATGAAGTATTGAACATTACTTTGAATGTACCATCAGCAGCAGATGCTGATTGGGACCTTCAAGGATTGGTTGGATGGAA
CCCAGACTATGATGATCCATCAACTTACCTCGATACACTTCAACCATCTTCAGAAGACCAAACAAAAGTATACCTTGGTT
TTGCAGGTGGTGTGGACAACGCTTCTGCTAAAGCAGTTGGCTTAGATGAGTATGCAAAACTTCTTGCAGATGCCAATAGT
GAGTCATTGGATGTAACGAAACGTTACGAAAAATATGCTACTGCTCAAGCTTGGTTGAGTGACAGTGCCTTGGTAATCCC
AACAATGTCAAGTACAGGTGCAGCAACTGTCATCTCTAAAGTGGTCCCATTCTCTGGCCCATCATCTCAAACAGGTAACA
AAGGATCTTCATACTTCAAATATGTAGAAGTTCAAGATGAACCAGTTACTAAGAAACAATACGAACAAGCACGTGAAAAA
TGGCAAAAAGAAAAAGCTGAGTCAAACAAAAAAGCTCAACAAGATCTTGAAAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(80-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2NQR7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

60.241

100

0.605
  amiA3 Streptococcus thermophilus LMG 18311

59.789

100

0.601
  amiA Streptococcus salivarius strain HSISS4

59.819

100

0.599

Multiple sequence alignment