Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   SPAF_RS02790 Genome accession   NC_017905
Coordinates   547001..548500 (+) Length   499 a.a.
NCBI ID   WP_014712957.1    Uniprot ID   I1ZKG6
Organism   Streptococcus parasanguinis FW213     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 542001..553500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPAF_RS02775 (Spaf_0527) sufB 542028..543440 (+) 1413 WP_003015477.1 Fe-S cluster assembly protein SufB -
  SPAF_RS02780 (Spaf_0528) - 543496..544737 (-) 1242 WP_014712956.1 serine hydrolase -
  SPAF_RS02785 (Spaf_0529) amiA3 544942..546927 (+) 1986 WP_003015523.1 peptide ABC transporter substrate-binding protein Regulator
  SPAF_RS02790 (Spaf_0530) amiC 547001..548500 (+) 1500 WP_014712957.1 ABC transporter permease Regulator
  SPAF_RS02795 (Spaf_0531) amiD 548500..549426 (+) 927 WP_003010290.1 oligopeptide ABC transporter permease OppC Regulator
  SPAF_RS02800 (Spaf_0532) amiE 549438..550505 (+) 1068 WP_014712958.1 ABC transporter ATP-binding protein Regulator
  SPAF_RS02805 (Spaf_0533) amiF 550516..551442 (+) 927 WP_041826241.1 ATP-binding cassette domain-containing protein Regulator
  SPAF_RS10445 - 551479..552663 (-) 1185 Protein_511 transposase -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 55884.89 Da        Isoelectric Point: 10.0529

>NTDB_id=51118 SPAF_RS02790 WP_014712957.1 547001..548500(+) (amiC) [Streptococcus parasanguinis FW213]
MKKYVFMRILRSLVSIFLVTTLTYMIIYTLTPRNLIFKNDPNYNKVAKTKDSKINYENTVYDRMGYLEYMDSKSLQQKAS
EEDSSVTVDATAANEKIYTKYINKLGHGWKLQRFPESKSFYAVREIPVFERVISFYANLIQFDHPGWVKDASNPNLKRYI
RIENDPSIGWLVVGSGTKHKYLLYFNGQFPYVHQNFVTLNLGNSYPTYSNTPVLQVITQGQGTTKKSEVNFPTGKKTSSI
DIYSRTYKSPSKADSQDISRFGKGDAYTATLSNYENPSMIASSSIIGLIGIAIAYLIAIPLGSYMALFKNSWFDSISTAT
LTFMMSLPTIALVYIVRLAGSFVGLPDSFPVLGAQDWRSYVLPSLILGLLSAPFIAVWIRRYMIDIHSQDFVRFARSKGL
SEREISRKHIFKNAMVPLVSGIPGSIIGVISGATLTETVFAFPGMGKMLIDSIKASNNTMVIGLVFIFTSLGIFAAMLGD
ILMTVLDPRIKLTNTKGGK

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=51118 SPAF_RS02790 WP_014712957.1 547001..548500(+) (amiC) [Streptococcus parasanguinis FW213]
ATGAAAAAATATGTTTTTATGCGTATTTTGCGTTCGTTAGTGTCGATCTTTCTCGTCACGACATTAACCTACATGATTAT
CTATACGCTAACACCGAGAAATCTCATCTTTAAGAATGACCCTAACTATAATAAAGTAGCAAAGACAAAAGATTCGAAGA
TCAACTACGAAAATACTGTCTATGATCGCATGGGTTATTTGGAATACATGGATTCAAAGAGCTTACAACAAAAAGCAAGT
GAAGAAGATTCATCAGTTACAGTTGATGCGACCGCGGCCAATGAAAAGATCTATACGAAATACATTAATAAGCTAGGTCA
TGGCTGGAAATTGCAACGTTTCCCAGAAAGTAAGTCCTTCTATGCAGTACGTGAAATCCCGGTTTTTGAACGTGTCATCA
GCTTCTATGCGAATTTAATTCAATTTGATCATCCAGGTTGGGTGAAAGATGCCTCCAATCCAAATCTGAAACGCTATATC
CGTATTGAAAATGATCCATCTATTGGTTGGTTAGTAGTAGGTTCAGGTACGAAACACAAATACCTCTTGTACTTCAATGG
TCAATTCCCATATGTACACCAAAACTTTGTAACCTTAAACCTTGGAAATTCATATCCAACTTATTCAAATACCCCTGTTC
TTCAAGTGATTACCCAAGGACAAGGAACGACTAAGAAGAGTGAAGTGAACTTCCCAACAGGTAAAAAGACATCTTCAATC
GATATCTACTCACGTACTTACAAATCACCAAGTAAGGCAGACTCACAAGACATCAGTCGATTTGGTAAAGGGGACGCTTA
TACAGCAACGTTGAGCAACTATGAGAATCCATCCATGATTGCATCTTCTTCAATCATTGGTTTGATTGGTATTGCGATTG
CTTACTTGATTGCGATTCCATTAGGATCTTACATGGCTCTGTTCAAGAACTCATGGTTTGATAGCATCTCAACAGCAACC
TTGACATTTATGATGTCTCTTCCAACTATTGCCCTTGTTTACATTGTGCGTCTAGCAGGTTCATTTGTTGGACTTCCAGA
CTCATTCCCAGTACTTGGAGCACAGGACTGGCGTTCATATGTATTGCCATCTCTGATTCTTGGTTTGTTGAGTGCGCCAT
TTATCGCAGTTTGGATTCGTCGTTACATGATCGATATCCATTCGCAAGATTTCGTCCGTTTTGCTCGTTCAAAAGGATTG
TCAGAACGTGAGATCTCAAGAAAACACATCTTCAAAAATGCGATGGTTCCATTGGTATCTGGTATTCCAGGTTCTATTAT
TGGAGTTATCTCAGGTGCGACACTTACTGAAACAGTCTTCGCTTTCCCAGGTATGGGTAAAATGTTGATTGACTCTATTA
AAGCATCAAACAACACCATGGTCATCGGACTTGTCTTCATCTTCACATCACTTGGTATCTTTGCTGCCATGTTAGGTGAT
ATCTTGATGACAGTGCTTGATCCACGGATTAAATTAACGAATACGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I1ZKG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

71.343

100

0.713
  amiC Streptococcus thermophilus LMD-9

71.142

100

0.711
  amiC Streptococcus thermophilus LMG 18311

71.142

100

0.711

Multiple sequence alignment