Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   SPAF_RS02795 Genome accession   NC_017905
Coordinates   548500..549426 (+) Length   308 a.a.
NCBI ID   WP_003010290.1    Uniprot ID   A0AB39LCL1
Organism   Streptococcus parasanguinis FW213     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 543500..554426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPAF_RS02785 (Spaf_0529) amiA3 544942..546927 (+) 1986 WP_003015523.1 peptide ABC transporter substrate-binding protein Regulator
  SPAF_RS02790 (Spaf_0530) amiC 547001..548500 (+) 1500 WP_014712957.1 ABC transporter permease Regulator
  SPAF_RS02795 (Spaf_0531) amiD 548500..549426 (+) 927 WP_003010290.1 oligopeptide ABC transporter permease OppC Regulator
  SPAF_RS02800 (Spaf_0532) amiE 549438..550505 (+) 1068 WP_014712958.1 ABC transporter ATP-binding protein Regulator
  SPAF_RS02805 (Spaf_0533) amiF 550516..551442 (+) 927 WP_041826241.1 ATP-binding cassette domain-containing protein Regulator
  SPAF_RS10445 - 551479..552663 (-) 1185 Protein_511 transposase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34580.61 Da        Isoelectric Point: 9.8986

>NTDB_id=51119 SPAF_RS02795 WP_003010290.1 548500..549426(+) (amiD) [Streptococcus parasanguinis FW213]
MATIDKNKFQFVKRDDFASEVIDAPAYSYWKSVFRQFLKKRTTIIMLAILIGILLMSFVYPMFSNFDYNDVSKVNDFSAR
LNPPSAKAFFGTDNNGKSLFDGVWFGARNSIIISFIATVINVVVGVIVGGIWGISKSIDRIMMEVYNVISNIPFMLIVIV
LTYSMGSGFWNLILAMSLTGWIGIAYTIRVQIMRYRDLEYNLASRTLGTPTLKIVTKNILPQLVSVIVTQTSQLLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTVLILVSLSFFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=51119 SPAF_RS02795 WP_003010290.1 548500..549426(+) (amiD) [Streptococcus parasanguinis FW213]
ATGGCTACAATCGATAAAAATAAATTTCAGTTTGTAAAACGCGATGACTTTGCCTCTGAAGTAATCGATGCTCCAGCGTA
TTCATACTGGAAATCTGTATTCAGACAATTCTTGAAAAAAAGAACCACTATCATTATGCTTGCTATTTTGATTGGGATTC
TCTTGATGAGTTTTGTCTACCCGATGTTTTCAAATTTTGATTACAACGACGTAAGTAAGGTAAATGACTTTTCAGCACGT
TTGAATCCACCAAGCGCCAAAGCTTTCTTTGGTACAGATAATAACGGTAAATCCCTCTTTGATGGAGTTTGGTTTGGTGC
TCGGAATTCAATTATCATTTCCTTCATTGCCACTGTTATTAACGTGGTAGTAGGAGTCATCGTTGGTGGAATTTGGGGGA
TCTCAAAATCTATCGACCGTATCATGATGGAAGTTTATAACGTTATTTCAAACATTCCATTTATGTTGATCGTTATCGTC
TTGACTTACTCAATGGGATCTGGTTTCTGGAACTTGATTCTTGCCATGTCCTTAACAGGATGGATCGGAATTGCTTATAC
CATTCGTGTCCAAATTATGCGTTACCGTGATTTGGAGTACAACTTGGCCAGCCGAACATTAGGAACACCAACTTTGAAAA
TTGTTACGAAAAATATTTTGCCTCAATTGGTATCTGTTATCGTGACACAAACATCACAGTTACTTCCAAGCTTTATTTCT
TACGAAGCTTTCCTTTCCTTCTTCGGACTTGGTCTTCCAATCACAGTTCCAAGTTTGGGACGGTTGATTTCTGACTATTC
TCAAAACGTAACTACAAATGCCTACCTATTCTGGATTCCGCTTACTGTTTTGATTTTAGTATCTTTGTCATTCTTTATCG
TCGGACAAAACTTGGCCGATGCCAGCGACCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(123-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

79.545

100

0.795
  amiD Streptococcus thermophilus LMG 18311

78.247

100

0.782
  amiD Streptococcus thermophilus LMD-9

78.247

100

0.782

Multiple sequence alignment