Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   SPAF_RS02800 Genome accession   NC_017905
Coordinates   549438..550505 (+) Length   355 a.a.
NCBI ID   WP_014712958.1    Uniprot ID   -
Organism   Streptococcus parasanguinis FW213     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 544438..555505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPAF_RS02785 (Spaf_0529) amiA3 544942..546927 (+) 1986 WP_003015523.1 peptide ABC transporter substrate-binding protein Regulator
  SPAF_RS02790 (Spaf_0530) amiC 547001..548500 (+) 1500 WP_014712957.1 ABC transporter permease Regulator
  SPAF_RS02795 (Spaf_0531) amiD 548500..549426 (+) 927 WP_003010290.1 oligopeptide ABC transporter permease OppC Regulator
  SPAF_RS02800 (Spaf_0532) amiE 549438..550505 (+) 1068 WP_014712958.1 ABC transporter ATP-binding protein Regulator
  SPAF_RS02805 (Spaf_0533) amiF 550516..551442 (+) 927 WP_041826241.1 ATP-binding cassette domain-containing protein Regulator
  SPAF_RS10445 - 551479..552663 (-) 1185 Protein_511 transposase -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39510.13 Da        Isoelectric Point: 4.6328

>NTDB_id=51120 SPAF_RS02800 WP_014712958.1 549438..550505(+) (amiE) [Streptococcus parasanguinis FW213]
MTSNNNIILSAQDIVVEFDVRDRVLTAIRGVSLELVEGEVLALVGESGSGKSVLTKTFTGMLEDNGRIAQGSIKYRGQEL
TDLKSNKDWENIRGSKIATIFQDPMTSLDPINTIGSQIIEVIIKHQGKTAKEAREMALDYMEKVGIPDAERRFDEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKSLQKEYQFTVIFITHDLGVVASIADKVAVMYAGEIVE
FGKVEEIFYDPKHPYTWSLLSSLPQLSTSDGDLYSIPGTPPSLYAPIKGDAFALRSDYAMQIDFEEEAPAFKVTDTHWAK
TWLLHPDAPTVHKPEVIENLHEKIGSKMGFTHITE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=51120 SPAF_RS02800 WP_014712958.1 549438..550505(+) (amiE) [Streptococcus parasanguinis FW213]
ATGACATCAAATAACAATATTATTTTATCTGCTCAAGATATCGTAGTGGAATTTGACGTGCGCGATCGCGTACTGACAGC
TATTCGTGGCGTATCGCTTGAGCTAGTAGAAGGTGAAGTTCTTGCCTTGGTTGGTGAGTCAGGTTCAGGGAAATCAGTTT
TGACAAAAACGTTCACCGGAATGTTAGAAGATAACGGTCGTATTGCCCAAGGTTCGATTAAATACCGTGGTCAAGAATTG
ACAGATTTGAAATCGAATAAAGATTGGGAAAATATTCGTGGATCTAAGATCGCTACAATTTTCCAAGACCCAATGACAAG
TTTGGACCCAATTAATACAATTGGCTCACAAATTATCGAAGTCATTATCAAACACCAAGGAAAAACAGCTAAAGAAGCCA
GAGAAATGGCATTGGACTATATGGAGAAAGTTGGAATTCCAGATGCTGAACGTCGTTTTGATGAGTATCCATTCCAATAT
TCAGGTGGGATGCGTCAACGGATCGTTATTGCCATTGCCTTGGCCTGCCGTCCAGATATCTTGATCTGTGACGAACCAAC
AACAGCCCTTGACGTAACCATTCAAGCGCAAATCATTGATTTGTTGAAATCCCTTCAAAAAGAATACCAATTTACAGTTA
TCTTTATCACCCACGACTTAGGTGTGGTTGCAAGTATTGCAGATAAAGTAGCCGTTATGTATGCTGGAGAAATTGTTGAG
TTTGGTAAGGTAGAAGAAATTTTCTACGATCCAAAACATCCATACACATGGAGCTTGCTTTCAAGCTTGCCTCAATTGTC
AACCTCAGATGGTGATCTTTACTCTATTCCAGGGACTCCGCCATCATTGTATGCTCCAATCAAAGGAGATGCCTTCGCAC
TTCGTTCAGATTATGCGATGCAGATTGATTTTGAAGAAGAGGCACCTGCTTTCAAAGTGACCGATACTCACTGGGCTAAG
ACATGGTTGCTCCATCCAGATGCACCAACAGTTCATAAACCAGAAGTAATCGAAAACCTTCACGAAAAGATTGGCTCAAA
AATGGGCTTCACTCACATTACAGAATAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

83.003

99.437

0.825
  amiE Streptococcus thermophilus LMG 18311

82.436

99.437

0.82
  amiE Streptococcus thermophilus LMD-9

82.436

99.437

0.82
  oppD Streptococcus mutans UA159

57.391

97.183

0.558

Multiple sequence alignment