Detailed information NTG0510629

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: STT19_RS08830
• Genome accession: NZ_CP065487
• Coordinates: 1708645..1709073 (-)
• Length: 142 a.a.
• NCBI ID: WP_171815055.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain ST19
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1703645..1714073

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STT19_RS08785 (STT19_08815)	-	1703783..1704226 (-)	444	WP_041829335.1	hypothetical protein	-
STT19_RS08790	-	1704300..1704725 (-)	426	WP_100273189.1	CPBP family intramembrane glutamic endopeptidase	-
STT19_RS08795	-	1704682..1704957 (-)	276	WP_100273190.1	CAAX protease	-
STT19_RS08800 (STT19_08825)	-	1704969..1705166 (-)	198	WP_159340988.1	helix-turn-helix transcriptional regulator	-
STT19_RS08805 (STT19_08830)	-	1705414..1706607 (-)	1194	WP_084825660.1	acetate kinase	-
STT19_RS08810 (STT19_08835)	comYH	1706663..1707619 (-)	957	WP_023909974.1	class I SAM-dependent methyltransferase	Machinery gene
STT19_RS08815 (STT19_08840)	comGG	1707664..1707981 (-)	318	WP_023909975.1	competence type IV pilus minor pilin ComGG	-
STT19_RS08820 (STT19_08845)	comYF	1707959..1708396 (-)	438	WP_084825661.1	competence type IV pilus minor pilin ComGF	Machinery gene
STT19_RS08825 (STT19_08850)	comGE	1708380..1708673 (-)	294	WP_023909978.1	competence type IV pilus minor pilin ComGE	-
STT19_RS08830 (STT19_08855)	comYD	1708645..1709073 (-)	429	WP_171815055.1	competence type IV pilus minor pilin ComGD	Machinery gene
STT19_RS08835 (STT19_08860)	comYC	1709033..1709359 (-)	327	WP_023909980.1	competence type IV pilus major pilin ComGC	Machinery gene
STT19_RS08840 (STT19_08865)	comYB	1709356..1710456 (-)	1101	WP_159340986.1	competence type IV pilus assembly protein ComGB	Machinery gene
STT19_RS08845 (STT19_08870)	comYA	1710338..1711279 (-)	942	WP_014622005.1	competence type IV pilus ATPase ComGA	Machinery gene
STT19_RS08850 (STT19_08875)	-	1711360..1711722 (-)	363	WP_023909982.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15874.46 Da
• Isoelectric Point: 10.4608

>NTDB_id=510629 STT19_RS08830 WP_171815055.1 1708645..1709073(-) (comYD) [Streptococcus thermophilus strain ST19]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASSEGSNVELQLTKN
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide

• Length: 429 bp

>NTDB_id=510629 STT19_RS08830 WP_171815055.1 1708645..1709073(-) (comYD) [Streptococcus thermophilus strain ST19]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACGCTAGCAGT
GGTTGTCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCATCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGAAT
AAGGTTAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCTAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	52.672	92.254	0.486
comYD	Streptococcus mutans UA159	52.672	92.254	0.486
comYD	Streptococcus gordonii str. Challis substr. CH1	42.143	98.592	0.415
comGD/cglD	Streptococcus pneumoniae Rx1	43.307	89.437	0.387
comGD/cglD	Streptococcus pneumoniae D39	43.307	89.437	0.387
comGD/cglD	Streptococcus pneumoniae R6	43.307	89.437	0.387
comGD/cglD	Streptococcus mitis NCTC 12261	43.307	89.437	0.387
comGD/cglD	Streptococcus pneumoniae TIGR4	43.307	89.437	0.387
comGD/cglD	Streptococcus mitis SK321	42.52	89.437	0.38
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38