Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   STT19_RS08810 Genome accession   NZ_CP065487
Coordinates   1706663..1707619 (-) Length   318 a.a.
NCBI ID   WP_023909974.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST19     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1701663..1712619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STT19_RS08775 (STT19_08805) proC 1702224..1702994 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -
  STT19_RS08780 (STT19_08810) - 1703024..1703686 (-) 663 WP_084826165.1 type II CAAX endopeptidase family protein -
  STT19_RS08785 (STT19_08815) - 1703783..1704226 (-) 444 WP_041829335.1 hypothetical protein -
  STT19_RS08790 - 1704300..1704725 (-) 426 WP_100273189.1 CPBP family intramembrane glutamic endopeptidase -
  STT19_RS08795 - 1704682..1704957 (-) 276 WP_100273190.1 CAAX protease -
  STT19_RS08800 (STT19_08825) - 1704969..1705166 (-) 198 WP_159340988.1 helix-turn-helix transcriptional regulator -
  STT19_RS08805 (STT19_08830) - 1705414..1706607 (-) 1194 WP_084825660.1 acetate kinase -
  STT19_RS08810 (STT19_08835) comYH 1706663..1707619 (-) 957 WP_023909974.1 class I SAM-dependent methyltransferase Machinery gene
  STT19_RS08815 (STT19_08840) comGG 1707664..1707981 (-) 318 WP_023909975.1 competence type IV pilus minor pilin ComGG -
  STT19_RS08820 (STT19_08845) comYF 1707959..1708396 (-) 438 WP_084825661.1 competence type IV pilus minor pilin ComGF Machinery gene
  STT19_RS08825 (STT19_08850) comGE 1708380..1708673 (-) 294 WP_023909978.1 competence type IV pilus minor pilin ComGE -
  STT19_RS08830 (STT19_08855) comYD 1708645..1709073 (-) 429 WP_171815055.1 competence type IV pilus minor pilin ComGD Machinery gene
  STT19_RS08835 (STT19_08860) comYC 1709033..1709359 (-) 327 WP_023909980.1 competence type IV pilus major pilin ComGC Machinery gene
  STT19_RS08840 (STT19_08865) comYB 1709356..1710456 (-) 1101 WP_159340986.1 competence type IV pilus assembly protein ComGB Machinery gene
  STT19_RS08845 (STT19_08870) comYA 1710338..1711279 (-) 942 WP_014622005.1 competence type IV pilus ATPase ComGA Machinery gene
  STT19_RS08850 (STT19_08875) - 1711360..1711722 (-) 363 WP_023909982.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35916.03 Da        Isoelectric Point: 4.6046

>NTDB_id=510627 STT19_RS08810 WP_023909974.1 1706663..1707619(-) (comYH) [Streptococcus thermophilus strain ST19]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKIRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQEDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKDAPETFVYPLSDLQNPRVLKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=510627 STT19_RS08810 WP_023909974.1 1706663..1707619(-) (comYH) [Streptococcus thermophilus strain ST19]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAAATACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGAGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGACGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAGATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGGTCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

69.206

99.057

0.686
  comYH Streptococcus mutans UA140

69.206

99.057

0.686