Detailed information NTG0510631

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: STT19_RS08840
• Genome accession: NZ_CP065487
• Coordinates: 1709356..1710456 (-)
• Length: 366 a.a.
• NCBI ID: WP_159340986.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain ST19
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1704356..1715456

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STT19_RS08795	-	1704682..1704957 (-)	276	WP_100273190.1	CAAX protease	-
STT19_RS08800 (STT19_08825)	-	1704969..1705166 (-)	198	WP_159340988.1	helix-turn-helix transcriptional regulator	-
STT19_RS08805 (STT19_08830)	-	1705414..1706607 (-)	1194	WP_084825660.1	acetate kinase	-
STT19_RS08810 (STT19_08835)	comYH	1706663..1707619 (-)	957	WP_023909974.1	class I SAM-dependent methyltransferase	Machinery gene
STT19_RS08815 (STT19_08840)	comGG	1707664..1707981 (-)	318	WP_023909975.1	competence type IV pilus minor pilin ComGG	-
STT19_RS08820 (STT19_08845)	comYF	1707959..1708396 (-)	438	WP_084825661.1	competence type IV pilus minor pilin ComGF	Machinery gene
STT19_RS08825 (STT19_08850)	comGE	1708380..1708673 (-)	294	WP_023909978.1	competence type IV pilus minor pilin ComGE	-
STT19_RS08830 (STT19_08855)	comYD	1708645..1709073 (-)	429	WP_171815055.1	competence type IV pilus minor pilin ComGD	Machinery gene
STT19_RS08835 (STT19_08860)	comYC	1709033..1709359 (-)	327	WP_023909980.1	competence type IV pilus major pilin ComGC	Machinery gene
STT19_RS08840 (STT19_08865)	comYB	1709356..1710456 (-)	1101	WP_159340986.1	competence type IV pilus assembly protein ComGB	Machinery gene
STT19_RS08845 (STT19_08870)	comYA	1710338..1711279 (-)	942	WP_014622005.1	competence type IV pilus ATPase ComGA	Machinery gene
STT19_RS08850 (STT19_08875)	-	1711360..1711722 (-)	363	WP_023909982.1	DUF1033 family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 41841.92 Da
• Isoelectric Point: 10.0777

>NTDB_id=510631 STT19_RS08840 WP_159340986.1 1709356..1710456(-) (comYB) [Streptococcus thermophilus strain ST19]
MPEKISKTIRRPTGISSWKVWLNKDVSLRGISKGKKLKISQQVKVTQLFKQLLKAGFTLTEIVAFLERSHLLKETSLSLM
KESLIRGDRLDQMLALVGFSDNIVTQISLADKHGNLLGSLTKIETYMLRMTKVRKKLMEVATYPILLLGFLILIMLGLKN
YLLPQLLEGDGKNNWAVQLVQIFPQLFFVSLCGLLVLGLILYLWVKRQSALVFYRRMAKIPFIGQTVRLYTTAYYAREWG
NLLGQGVDLLDLVALMQEQKSKLFRELGADLEEALMLGQSFPERIASYPFFTKELSLIIAYGEANARLGYELEVYAEEVW
QNFFNRLNKATTFVQPLIFVIVAVVIVMIYVAMLLPMYQNMEGMMS

Nucleotide

• Length: 1101 bp

>NTDB_id=510631 STT19_RS08840 WP_159340986.1 1709356..1710456(-) (comYB) [Streptococcus thermophilus strain ST19]
TTGCCAGAGAAAATTTCCAAAACCATTCGTCGACCAACTGGAATCAGCAGTTGGAAGGTTTGGTTAAACAAGGATGTCTC
ACTGAGAGGGATATCCAAGGGGAAAAAATTAAAGATTAGTCAGCAAGTTAAGGTTACCCAGCTCTTCAAACAACTTTTAA
AGGCCGGTTTTACCTTAACTGAAATCGTAGCCTTTTTGGAGCGAAGTCACTTGCTGAAAGAAACATCCTTGTCTCTTATG
AAAGAGAGTTTAATACGCGGTGATAGGTTGGATCAGATGTTAGCGTTAGTGGGGTTTTCGGACAATATTGTTACTCAGAT
TTCTCTTGCTGACAAGCACGGTAATCTTCTAGGGAGTCTAACAAAGATTGAAACCTATATGCTTCGTATGACAAAGGTTC
GCAAGAAACTCATGGAGGTGGCGACTTATCCCATACTACTTCTGGGTTTTCTGATTCTGATTATGCTAGGACTTAAAAAT
TATCTTCTACCCCAACTCTTAGAGGGTGATGGTAAGAATAATTGGGCTGTACAGTTGGTTCAAATTTTTCCCCAGCTTTT
TTTTGTGAGTTTGTGTGGACTCCTTGTGTTGGGTTTAATTCTCTATCTATGGGTGAAACGACAGTCAGCCCTTGTTTTTT
ATAGGCGAATGGCCAAAATCCCTTTTATTGGTCAGACAGTAAGGCTTTACACGACCGCCTATTATGCTAGGGAATGGGGA
AATTTATTAGGTCAAGGCGTTGATTTGCTAGATTTGGTGGCTCTTATGCAAGAGCAAAAGTCTAAACTCTTCCGTGAGCT
GGGAGCCGATTTGGAAGAAGCCCTGATGCTGGGACAGAGTTTTCCTGAACGTATTGCCAGTTATCCGTTTTTTACTAAGG
AGCTCTCACTAATTATTGCTTATGGGGAGGCCAATGCGAGGTTGGGCTATGAGTTGGAAGTTTATGCCGAGGAGGTTTGG
CAAAACTTCTTTAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCCCTCATTTTTGTTATTGTTGCAGTTGTGATTGT
AATGATCTATGTAGCCATGCTATTACCAATGTATCAAAATATGGAAGGAATGATGTCATGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (52-164)

• Type II secretion system (T2SS), protein F (T2SSF) (236-356)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	54.678	93.443	0.511
comYB	Streptococcus mutans UA159	54.678	93.443	0.511
comYB	Streptococcus gordonii str. Challis substr. CH1	51.17	93.443	0.478
comGB/cglB	Streptococcus mitis NCTC 12261	50.453	90.437	0.456
comGB/cglB	Streptococcus mitis SK321	49.697	90.164	0.448
comGB/cglB	Streptococcus pneumoniae Rx1	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae D39	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae R6	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae TIGR4	49.695	89.617	0.445
comGB	Lactococcus lactis subsp. cremoris KW2	45.455	90.164	0.41