Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | I5Z97_RS07530 | Genome accession | NZ_CP065386 |
| Coordinates | 1572478..1572942 (+) | Length | 154 a.a. |
| NCBI ID | WP_196980195.1 | Uniprot ID | - |
| Organism | Glaesserella parasuis strain LHDR_HPS_1_2 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1567478..1577942
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I5Z97_RS07510 (I5Z97_07500) | - | 1567958..1569412 (-) | 1455 | WP_196980193.1 | aminoacyl-histidine dipeptidase | - |
| I5Z97_RS07515 (I5Z97_07505) | gpt | 1569593..1570072 (+) | 480 | WP_160403664.1 | xanthine phosphoribosyltransferase | - |
| I5Z97_RS07520 (I5Z97_07510) | gmk | 1570235..1570861 (+) | 627 | WP_196980194.1 | guanylate kinase | - |
| I5Z97_RS07525 (I5Z97_07515) | radA | 1570914..1572290 (-) | 1377 | WP_005711784.1 | DNA repair protein RadA | - |
| I5Z97_RS07530 (I5Z97_07520) | pilA | 1572478..1572942 (+) | 465 | WP_196980195.1 | pilin | Machinery gene |
| I5Z97_RS07535 (I5Z97_07525) | pilB | 1572990..1574375 (+) | 1386 | WP_196980196.1 | GspE/PulE family protein | Machinery gene |
| I5Z97_RS07540 (I5Z97_07530) | pilC | 1574368..1575564 (+) | 1197 | WP_196980197.1 | type II secretion system F family protein | Machinery gene |
| I5Z97_RS07545 (I5Z97_07535) | - | 1575561..1576229 (+) | 669 | WP_196980198.1 | prepilin peptidase | - |
| I5Z97_RS07550 (I5Z97_07540) | dapE | 1576313..1577446 (+) | 1134 | WP_196980199.1 | succinyl-diaminopimelate desuccinylase | - |
Sequence
Protein
Download Length: 154 a.a. Molecular weight: 16297.88 Da Isoelectric Point: 9.0812
>NTDB_id=509133 I5Z97_RS07530 WP_196980195.1 1572478..1572942(+) (pilA) [Glaesserella parasuis strain LHDR_HPS_1_2]
MKKIRLIRPLAKAFTLIELMIVIAIIAILATIAIPSYTSYTQKAALSELLSASASYKSDVEICIYNVGDKKIAECSSGKN
GVQADKSDVADAKYLKSISVAAGVITVAGKGNIDGYGYTMTPTLANNNITWTTSCRGSDTSLFPANFCGTKATQ
MKKIRLIRPLAKAFTLIELMIVIAIIAILATIAIPSYTSYTQKAALSELLSASASYKSDVEICIYNVGDKKIAECSSGKN
GVQADKSDVADAKYLKSISVAAGVITVAGKGNIDGYGYTMTPTLANNNITWTTSCRGSDTSLFPANFCGTKATQ
Nucleotide
Download Length: 465 bp
>NTDB_id=509133 I5Z97_RS07530 WP_196980195.1 1572478..1572942(+) (pilA) [Glaesserella parasuis strain LHDR_HPS_1_2]
ATGAAAAAAATCAGGTTAATTCGACCGCTTGCAAAAGCCTTTACCTTAATTGAGTTGATGATCGTGATCGCCATCATTGC
TATTTTAGCCACGATTGCAATCCCGTCTTACACCAGTTACACCCAAAAGGCTGCACTCTCTGAGTTATTAAGTGCTTCCG
CATCTTATAAATCCGATGTGGAAATTTGTATTTATAACGTGGGGGATAAAAAAATCGCAGAATGTAGTTCTGGTAAAAAT
GGCGTTCAAGCGGATAAATCCGATGTTGCCGATGCTAAATATCTTAAATCTATTTCCGTCGCTGCAGGTGTAATCACAGT
GGCTGGTAAAGGCAACATTGATGGCTACGGCTACACAATGACCCCGACATTAGCCAATAACAACATCACTTGGACAACAA
GCTGTCGAGGTTCTGACACCAGTTTATTCCCTGCGAATTTCTGTGGGACAAAAGCCACACAATAA
ATGAAAAAAATCAGGTTAATTCGACCGCTTGCAAAAGCCTTTACCTTAATTGAGTTGATGATCGTGATCGCCATCATTGC
TATTTTAGCCACGATTGCAATCCCGTCTTACACCAGTTACACCCAAAAGGCTGCACTCTCTGAGTTATTAAGTGCTTCCG
CATCTTATAAATCCGATGTGGAAATTTGTATTTATAACGTGGGGGATAAAAAAATCGCAGAATGTAGTTCTGGTAAAAAT
GGCGTTCAAGCGGATAAATCCGATGTTGCCGATGCTAAATATCTTAAATCTATTTCCGTCGCTGCAGGTGTAATCACAGT
GGCTGGTAAAGGCAACATTGATGGCTACGGCTACACAATGACCCCGACATTAGCCAATAACAACATCACTTGGACAACAA
GCTGTCGAGGTTCTGACACCAGTTTATTCCCTGCGAATTTCTGTGGGACAAAAGCCACACAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
92.81 |
99.351 |
0.922 |
| pilA | Haemophilus influenzae 86-028NP |
55.333 |
97.403 |
0.539 |
| pilA | Haemophilus influenzae Rd KW20 |
54 |
97.403 |
0.526 |
| comP | Acinetobacter baylyi ADP1 |
41.259 |
92.857 |
0.383 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
42.748 |
85.065 |
0.364 |
| pilA2 | Legionella pneumophila str. Paris |
42.748 |
85.065 |
0.364 |