Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   I5Z97_RS07540 Genome accession   NZ_CP065386
Coordinates   1574368..1575564 (+) Length   398 a.a.
NCBI ID   WP_196980197.1    Uniprot ID   -
Organism   Glaesserella parasuis strain LHDR_HPS_1_2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1569368..1580564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5Z97_RS07515 (I5Z97_07505) gpt 1569593..1570072 (+) 480 WP_160403664.1 xanthine phosphoribosyltransferase -
  I5Z97_RS07520 (I5Z97_07510) gmk 1570235..1570861 (+) 627 WP_196980194.1 guanylate kinase -
  I5Z97_RS07525 (I5Z97_07515) radA 1570914..1572290 (-) 1377 WP_005711784.1 DNA repair protein RadA -
  I5Z97_RS07530 (I5Z97_07520) pilA 1572478..1572942 (+) 465 WP_196980195.1 pilin Machinery gene
  I5Z97_RS07535 (I5Z97_07525) pilB 1572990..1574375 (+) 1386 WP_196980196.1 GspE/PulE family protein Machinery gene
  I5Z97_RS07540 (I5Z97_07530) pilC 1574368..1575564 (+) 1197 WP_196980197.1 type II secretion system F family protein Machinery gene
  I5Z97_RS07545 (I5Z97_07535) - 1575561..1576229 (+) 669 WP_196980198.1 prepilin peptidase -
  I5Z97_RS07550 (I5Z97_07540) dapE 1576313..1577446 (+) 1134 WP_196980199.1 succinyl-diaminopimelate desuccinylase -
  I5Z97_RS07555 (I5Z97_07545) clpX 1577520..1578770 (-) 1251 WP_196980200.1 ATP-dependent protease ATP-binding subunit ClpX -
  I5Z97_RS07560 (I5Z97_07550) clpP 1578777..1579358 (-) 582 WP_005711766.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  I5Z97_RS07565 (I5Z97_07555) - 1579459..1579848 (+) 390 WP_021113176.1 SufE family protein -

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 45678.50 Da        Isoelectric Point: 10.0610

>NTDB_id=509135 I5Z97_RS07540 WP_196980197.1 1574368..1575564(+) (pilC) [Glaesserella parasuis strain LHDR_HPS_1_2]
MNNIYEFQWKGRNRFGQKQTGRQLAESREVLEKLLQQKGYSQLRISRHFALPTAPKKEEINQFMQQLALLIQAKIPLKQS
LVMLLETCQNRTFYRWQQETIRLIEAGFALSVAFEKQGKYINPQEIQLIKMAETSGNLGLILTNIAQRREKSEKLAKKIK
KILFYPVFILAISITLSILLLLFIVPQFAELYGSKGKSLPLITEILFSLSNFLQHSILTLIILCVLCFLLIHILNKKTDL
IKRLKFIILSHIPILKGIIQYSRIIFFCQNSSLMLASHIRLDTVLHSFLANKSDDILLQRSLATTLTYLKQGYRLADSLD
PKLFPTDMLQMIAIGEQSGKLSPMLQQISDGYQQRLDYQIDILSQLLEPMLMVLMGIIVGTILVGLYLPIFDMGAMIE

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=509135 I5Z97_RS07540 WP_196980197.1 1574368..1575564(+) (pilC) [Glaesserella parasuis strain LHDR_HPS_1_2]
ATGAATAACATTTATGAATTTCAATGGAAAGGACGCAACCGCTTTGGACAAAAGCAAACAGGGCGACAGCTTGCCGAAAG
CCGAGAAGTGCTAGAAAAACTCTTGCAACAAAAAGGCTATAGCCAGTTACGCATTAGCCGACATTTTGCCTTGCCGACGG
CACCGAAAAAGGAAGAAATTAATCAATTTATGCAACAGTTGGCATTATTAATTCAAGCCAAAATCCCCCTAAAACAGAGT
TTGGTAATGTTGCTGGAAACTTGCCAAAATCGCACCTTTTACCGTTGGCAACAAGAGACAATCCGCTTGATTGAAGCTGG
CTTTGCCTTATCCGTTGCCTTTGAAAAACAGGGGAAATATATCAATCCACAAGAGATCCAATTAATTAAAATGGCAGAAA
CAAGCGGTAATTTAGGGCTGATTTTAACCAATATTGCACAACGCCGTGAAAAATCGGAAAAATTAGCCAAGAAAATTAAA
AAAATTCTCTTTTATCCCGTCTTTATTTTAGCTATTTCAATCACACTCTCTATTTTATTATTACTTTTTATTGTGCCACA
ATTTGCAGAACTTTATGGCTCAAAAGGAAAATCATTACCTTTAATTACCGAAATACTCTTTAGCCTATCCAATTTTCTAC
AACACTCTATTTTAACGCTAATTATTTTATGTGTGTTATGTTTTCTATTAATTCATATTTTAAATAAAAAAACAGATCTT
ATTAAACGCCTAAAGTTTATTATATTAAGCCATATTCCTATTTTAAAAGGCATTATCCAGTATTCACGCATTATCTTTTT
TTGTCAAAATAGCAGTTTAATGCTGGCTTCACATATTCGTTTAGATACTGTACTTCATTCCTTTTTAGCCAATAAAAGTG
ATGATATTTTATTACAACGTTCTCTAGCAACTACACTAACTTATTTAAAACAAGGTTATCGTTTAGCCGACAGTTTAGAT
CCAAAACTCTTTCCTACGGATATGTTACAGATGATTGCCATTGGCGAGCAGAGCGGAAAATTATCGCCAATGTTGCAACA
AATCAGCGACGGTTATCAACAGCGGTTAGATTATCAAATTGATATACTTTCCCAATTATTAGAGCCGATGTTAATGGTGT
TAATGGGAATTATTGTAGGAACTATTTTAGTCGGTTTGTATTTGCCGATTTTTGATATGGGAGCAATGATAGAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(63-186)

Type II secretion system (T2SS), protein F (T2SSF)

(267-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Glaesserella parasuis strain SC1401

98.744

100

0.987
  pilC Haemophilus influenzae 86-028NP

38.653

100

0.389
  pilC Haemophilus influenzae Rd KW20

38.653

100

0.389