Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   I0K14_RS17790 Genome accession   NZ_CP065149
Coordinates   3490206..3491444 (-) Length   412 a.a.
NCBI ID   WP_000990710.1    Uniprot ID   A0AAX3Q7Y1
Organism   Bacillus paranthracis strain Gxun-30     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3485206..3496444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I0K14_RS17765 (I0K14_17765) spoVS 3485285..3485545 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  I0K14_RS17770 (I0K14_17770) - 3485694..3486488 (-) 795 WP_001221098.1 TIGR00282 family metallophosphoesterase -
  I0K14_RS17775 (I0K14_17775) rny 3486653..3488218 (-) 1566 WP_000099355.1 ribonuclease Y -
  I0K14_RS17780 (I0K14_17780) - 3488704..3489126 (-) 423 Protein_3458 recombinase RecA -
  I0K14_RS17785 (I0K14_17785) recA 3489453..3490061 (-) 609 Protein_3459 recombinase RecA -
  I0K14_RS17790 (I0K14_17790) cinA 3490206..3491444 (-) 1239 WP_000990710.1 competence/damage-inducible protein CinA Machinery gene
  I0K14_RS17795 (I0K14_17795) pgsA 3491465..3492043 (-) 579 WP_001052963.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  I0K14_RS17800 (I0K14_17800) - 3492107..3493033 (-) 927 WP_000137486.1 helix-turn-helix domain-containing protein -
  I0K14_RS17805 (I0K14_17805) - 3493055..3493840 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  I0K14_RS17810 (I0K14_17810) - 3493980..3494228 (-) 249 WP_000114454.1 DUF3243 domain-containing protein -
  I0K14_RS17815 (I0K14_17815) ymfI 3494304..3495017 (-) 714 WP_000759622.1 elongation factor P 5-aminopentanone reductase -
  I0K14_RS17820 (I0K14_17820) yfmH 3495121..3496407 (-) 1287 WP_000411945.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45465.72 Da        Isoelectric Point: 5.2165

>NTDB_id=507386 I0K14_RS17790 WP_000990710.1 3490206..3491444(-) (cinA) [Bacillus paranthracis strain Gxun-30]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
IASSLAEELVYDEKALASISDYFKRTGREFTENNKKQALVLDGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNAHEAEKLIQHVED
LILERVGEFFYGYDQEFLHYKAIELLKKKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYHNDVKQHVLHVPEEV
LSTDGAVSKECARYLAENVRELLKADIGISFTGVAGPDASEHKEPGTVFVGLAMKDEPTVVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=507386 I0K14_RS17790 WP_000990710.1 3490206..3491444(-) (cinA) [Bacillus paranthracis strain Gxun-30]
ATGAACGCTGAAATTATTGCGGTTGGAACAGAATTATTACTTGGACAAATTGCAAATACGAACGCCCAGTTTTTGTCTGA
AAAGTTAGCTTCAATTGGAATTAACGTGTACTACCATACTGTAGTTGGTGATAATAACAAGCGACTGCAGCAGGCGATTG
AAGTTGCAGAAGAACGTGCGGATATGCTCATTTTCACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAGGAAACA
ATAGCGTCTAGCTTAGCGGAAGAGCTTGTATATGATGAAAAGGCATTAGCATCAATAAGCGATTACTTTAAGCGAACAGG
TCGAGAGTTCACGGAGAATAATAAAAAGCAGGCGCTCGTTTTGGATGGGGCGACTGTATTTGCAAATGATCATGGTATGG
CACCTGGTATGGGATTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCGAAAGAAATGAAGCCGATGTAT
GTAAGTTATGTGGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGCGTGCTTCGCTTTTTCGGAAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAATCCGACAATCGCCCCGCTTGCCAATG
ATGGAGAAGTGACATTACGTTTAACGGCTAAACATCAAAATGCTCATGAAGCGGAGAAACTCATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTTGGAGAATTTTTCTACGGGTATGACCAAGAGTTTCTACATTATAAGGCGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCGGAAAGTTTAACAGGTGGTCTCTTTGGTAATCAAGTAACAGAAAACGCTGGTG
TGTCTTCCGTATTTAAAGGCGGTGTCATTTGTTACCATAATGATGTGAAGCAACATGTATTACATGTACCTGAGGAAGTC
TTGTCTACTGACGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAGAGAATTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGACCAGATGCTTCAGAACATAAAGAGCCGGGAACTGTATTTGTTGGATTGGCGA
TGAAAGATGAACCAACTGTAGTCTTTCCTCTAAATTTAAGCGGAAGTCGTCAACAAATTAGGGAACGCTCAGCAAAATAT
GGATTTTATCATTTGTATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Competence-damaged protein (CinA)

(258-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.981

100

0.59
  cinA Streptococcus mitis SK321

47.494

100

0.483
  cinA Streptococcus pneumoniae TIGR4

47.255

100

0.481
  cinA Streptococcus pneumoniae Rx1

46.778

100

0.476
  cinA Streptococcus pneumoniae R6

46.778

100

0.476
  cinA Streptococcus pneumoniae D39

46.539

100

0.473
  cinA Streptococcus mitis NCTC 12261

46.301

100

0.471
  cinA Streptococcus mutans UA159

45.813

98.544

0.451
  cinA Streptococcus suis isolate S10

41.534

91.748

0.381