Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   KQY30_RS24085 Genome accession   NZ_CP077658
Coordinates   5692406..5693086 (+) Length   226 a.a.
NCBI ID   WP_269801364.1    Uniprot ID   -
Organism   Streptomyces sp. GMY02     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5687406..5698086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQY30_RS24055 (KQY30_24055) - 5687747..5688958 (-) 1212 WP_217308609.1 cation:proton antiporter -
  KQY30_RS24060 (KQY30_24060) - 5689208..5689402 (+) 195 WP_046498879.1 hypothetical protein -
  KQY30_RS24075 (KQY30_24075) tig 5690001..5691428 (+) 1428 WP_217308610.1 trigger factor -
  KQY30_RS24080 (KQY30_24080) - 5691727..5692332 (+) 606 WP_217311289.1 ATP-dependent Clp protease proteolytic subunit -
  KQY30_RS24085 (KQY30_24085) clpP 5692406..5693086 (+) 681 WP_269801364.1 ATP-dependent Clp protease proteolytic subunit Regulator
  KQY30_RS24090 (KQY30_24090) clpX 5693234..5694526 (+) 1293 WP_046498884.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  KQY30_RS24095 (KQY30_24095) - 5694615..5695553 (-) 939 WP_217308611.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24689.08 Da        Isoelectric Point: 4.7914

>NTDB_id=506799 KQY30_RS24085 WP_269801364.1 5692406..5693086(+) (clpP) [Streptomyces sp. GMY02]
MVNTHMHMNSNSASGLYTGPQVDNRYVVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISIYINSPGGSMTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTAGKRLALPNARVLIHQPSSQTGREQLSD
LEIAANEILRMRAQLEEMLAKHSTTPIEKVRDDIERDKILTAEDALAYGLVDQIVSTRKTTAAAAA

Nucleotide


Download         Length: 681 bp        

>NTDB_id=506799 KQY30_RS24085 WP_269801364.1 5692406..5693086(+) (clpP) [Streptomyces sp. GMY02]
ATGGTGAACACCCACATGCACATGAACAGCAACTCCGCGAGCGGCCTCTACACCGGCCCTCAGGTGGACAACCGTTACGT
CGTTCCGCGCTTCGTGGAACGCACCTCGCAGGGTGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGTGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTCCTCTGCCTTGAGTCGATGGACCCC
GACCGGGACATCTCGATCTACATCAACAGCCCCGGCGGCTCGATGACGGCGCTGACCGCCATCTACGACACGATGCAGTT
CGTGAAGCCCGACATCCAGACCGTGTGCATGGGCCAGGCCGCGTCCGCCGCCGCCGTCCTGCTCGCCGCCGGCACGGCCG
GCAAGCGGCTCGCCCTGCCCAACGCGCGCGTGCTGATCCACCAGCCGTCCAGCCAGACCGGCCGTGAGCAGCTTTCCGAC
CTGGAGATCGCGGCCAACGAGATCCTCCGGATGCGCGCCCAGCTCGAAGAGATGCTGGCCAAGCACTCCACCACGCCGAT
CGAGAAGGTCCGCGACGACATCGAGCGTGACAAGATCCTCACCGCCGAGGACGCGCTCGCGTACGGACTGGTCGACCAGA
TCGTGTCGACCCGCAAGACCACGGCCGCTGCGGCCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50

84.071

0.42
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.09

83.628

0.394
  clpP Streptococcus thermophilus LMD-9

45.361

85.841

0.389
  clpP Streptococcus thermophilus LMG 18311

45.361

85.841

0.389
  clpP Streptococcus pneumoniae R6

44.792

84.956

0.381
  clpP Streptococcus pneumoniae D39

44.792

84.956

0.381
  clpP Streptococcus pneumoniae TIGR4

44.792

84.956

0.381
  clpP Streptococcus pneumoniae Rx1

44.792

84.956

0.381
  clpP Streptococcus pyogenes MGAS315

44.33

85.841

0.381
  clpP Streptococcus pyogenes JRS4

44.33

85.841

0.381
  clpP Streptococcus mutans UA159

44.737

84.071

0.376
  clpP Lactococcus lactis subsp. cremoris KW2

43.979

84.513

0.372
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.455

84.513

0.367