Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   KRR37_RS09540 Genome accession   NZ_CP077652
Coordinates   2134968..2135651 (-) Length   227 a.a.
NCBI ID   WP_070204097.1    Uniprot ID   A0A1E7LKE4
Organism   Streptomyces sp. HNA39     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2129968..2140651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRR37_RS09530 (KRR37_09490) - 2132397..2133428 (+) 1032 WP_248870205.1 hypothetical protein -
  KRR37_RS09535 (KRR37_09495) clpX 2133512..2134810 (-) 1299 WP_018511479.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  KRR37_RS09540 (KRR37_09500) clpP 2134968..2135651 (-) 684 WP_070204097.1 ATP-dependent Clp protease proteolytic subunit Regulator
  KRR37_RS09545 (KRR37_09505) - 2135733..2136338 (-) 606 WP_018487168.1 ATP-dependent Clp protease proteolytic subunit -
  KRR37_RS09550 (KRR37_09510) tig 2136636..2138030 (-) 1395 WP_127465504.1 trigger factor -
  KRR37_RS09565 (KRR37_09525) - 2138625..2138819 (-) 195 WP_026237373.1 hypothetical protein -
  KRR37_RS09570 (KRR37_09530) - 2139279..2140484 (+) 1206 WP_248870206.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24909.29 Da        Isoelectric Point: 4.7981

>NTDB_id=506702 KRR37_RS09540 WP_070204097.1 2134968..2135651(-) (clpP) [Streptomyces sp. HNA39]
MVNTHMNNFSGASASGLYTGPQVDNRYVVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPHARVLIHQPSSQTGREQLS
DLEIAANEILRMRTQLEEMLARHSTTPLEKIREDIERDKILTAEDALAYGLVDQIVSTRKTTAGASL

Nucleotide


Download         Length: 684 bp        

>NTDB_id=506702 KRR37_RS09540 WP_070204097.1 2134968..2135651(-) (clpP) [Streptomyces sp. HNA39]
ATGGTGAACACCCACATGAACAACTTCTCCGGCGCCTCCGCGAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGTTA
CGTCGTCCCGCGCTTCGTGGAGCGCACCTCGCAGGGTGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAAGAGCGCG
TGATCTTCCTCGGCGTCCAGATCGACGACGCCTCGGCCAACGACGTCATGGCGCAGCTCCTCTGCCTGGAGTCGATGGAC
CCGGACCGCGACATCTCGATCTACATCAACAGCCCCGGCGGCTCGTTCACCGCGCTCACCGCGATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCCGCCTCCGCCGCCGCCGTCCTGCTGGCCGCCGGCACCC
CGGGCAAGCGCATGGCGCTCCCGCACGCCCGTGTCCTCATCCACCAGCCGTCCTCGCAGACGGGCCGCGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAACGAGATCCTCCGTATGCGGACGCAGCTGGAGGAGATGCTGGCCCGGCACTCGACGACCCC
GCTGGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTGACGGCCGAGGACGCCCTGGCGTACGGGCTCGTCGACC
AGATCGTGTCCACCCGCAAGACCACCGCGGGCGCATCGCTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E7LKE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50.526

83.7

0.423
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.34

82.819

0.392
  clpP Lactococcus lactis subsp. cremoris KW2

44.503

84.141

0.374
  clpP Streptococcus pyogenes JRS4

43.814

85.463

0.374
  clpP Streptococcus thermophilus LMG 18311

43.814

85.463

0.374
  clpP Streptococcus thermophilus LMD-9

43.814

85.463

0.374
  clpP Streptococcus pyogenes MGAS315

43.814

85.463

0.374
  clpP Streptococcus mutans UA159

44.211

83.7

0.37
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.979

84.141

0.37
  clpP Streptococcus pneumoniae Rx1

43.523

85.022

0.37
  clpP Streptococcus pneumoniae D39

43.523

85.022

0.37
  clpP Streptococcus pneumoniae R6

43.523

85.022

0.37
  clpP Streptococcus pneumoniae TIGR4

43.523

85.022

0.37