Detailed information NTG0506280

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: I2432_RS00755
• Genome accession: NZ_CP065054
• Coordinates: 129177..130211 (+)
• Length: 344 a.a.
• NCBI ID: WP_249093266.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain SEZ13
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 124177..135211

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I2432_RS00735 (LJFMMFNO_00145)	-	124571..124936 (+)	366	WP_012514777.1	DUF1033 family protein	-
I2432_RS00740 (LJFMMFNO_00146)	-	125473..127476 (+)	2004	Protein_111	DUF1430 domain-containing protein	-
I2432_RS00745 (LJFMMFNO_00148)	-	127478..128125 (+)	648	WP_206158896.1	ATP-binding cassette domain-containing protein	-
I2432_RS00750 (LJFMMFNO_00149)	comGA/cglA	128306..129244 (+)	939	WP_206158897.1	competence type IV pilus ATPase ComGA	Machinery gene
I2432_RS00755 (LJFMMFNO_00150)	comYB	129177..130211 (+)	1035	WP_249093266.1	competence type IV pilus assembly protein ComGB	Machinery gene
I2432_RS00760 (LJFMMFNO_00151)	comGC/cglC	130212..130535 (+)	324	WP_206158899.1	competence type IV pilus major pilin ComGC	Machinery gene
I2432_RS00765 (LJFMMFNO_00152)	comGD	130513..130938 (+)	426	WP_012514783.1	competence type IV pilus minor pilin ComGD	-
I2432_RS00770 (LJFMMFNO_00153)	comGE	130895..131185 (+)	291	WP_206158900.1	competence type IV pilus minor pilin ComGE	-
I2432_RS00775 (LJFMMFNO_00154)	comYF	131172..131606 (+)	435	WP_012677237.1	competence type IV pilus minor pilin ComGF	Machinery gene
I2432_RS00780 (LJFMMFNO_00155)	comGG	131584..131946 (+)	363	WP_206152302.1	competence type IV pilus minor pilin ComGG	-
I2432_RS00785 (LJFMMFNO_00156)	comYH	132008..132961 (+)	954	WP_037580627.1	class I SAM-dependent methyltransferase	Machinery gene
I2432_RS00790 (LJFMMFNO_00157)	-	133021..134220 (+)	1200	WP_165627047.1	acetate kinase	-
I2432_RS00795 (LJFMMFNO_00158)	-	134831..135013 (-)	183	WP_206158901.1	class IIb bacteriocin, lactobin A/cerein 7B family	-

Sequence

Protein

• Length: 344 a.a.
• Molecular weight: 39382.58 Da
• Isoelectric Point: 9.4455

>NTDB_id=506280 I2432_RS00755 WP_249093266.1 129177..130211(+) (comYB) [Streptococcus equi subsp. zooepidemicus strain SEZ13]
MISFLQRDISIAGRQGLKKLSSKQQEKLIQLLYNLLSNGFNLTEVIAFLRKSQLLLPVYVTSMEASLLKGNGLADMLAAL
GYSDAVMTQINLADKHGNIKLTLEKIQDYLSQFRQIKRKTIEAVTYPIILLGFLVVIMLGLRHYLIPQLESQNALTDLLL
HLPHYFLGFCLLLLSLIGSFYLYARSCSRLRLFSQLSYYPIIGSLLRQYLTAYYAREWGNLIGQGLELITILEMMSNEKS
QLMRELAKDIKQGLLAGQSFHQRVAAYPFFKKELSLMIEYGDIKSKLGRELDIYAQESWETFFSQLNRATQWIQPIIFLV
VAVVIVMIYAAILLPIYQHMGDVF

Nucleotide

• Length: 1035 bp

>NTDB_id=506280 I2432_RS00755 WP_249093266.1 129177..130211(+) (comYB) [Streptococcus equi subsp. zooepidemicus strain SEZ13]
TTGATCAGCTTCTTGCAGAGGGACATCTCAATAGCAGGCAGGCAAGGCTTGAAAAAATTATCCAGTAAGCAGCAAGAAAA
GCTTATCCAATTGCTCTATAACCTATTGTCTAACGGCTTTAATTTGACAGAGGTCATTGCTTTTTTGAGAAAAAGCCAGC
TGCTACTGCCAGTCTATGTTACAAGTATGGAAGCAAGCCTATTAAAGGGCAACGGCCTTGCTGACATGCTAGCAGCCTTA
GGTTACTCTGATGCTGTTATGACACAAATTAATCTGGCAGATAAGCATGGCAATATCAAGCTAACCTTGGAAAAAATTCA
GGACTATCTGAGTCAATTTCGCCAAATCAAGCGAAAGACCATCGAGGCAGTCACTTATCCGATCATACTTTTGGGTTTTT
TAGTGGTTATCATGCTAGGCTTGCGGCATTACCTAATCCCTCAGCTAGAGAGTCAAAATGCCTTGACTGACTTGTTGCTT
CATTTGCCTCATTATTTCTTAGGCTTTTGTCTGCTTTTGCTGTCGCTGATTGGCTCTTTTTACCTATATGCCAGGTCCTG
TAGCAGGTTAAGGCTATTTAGTCAGCTGAGCTATTATCCTATCATTGGGTCCTTATTGCGGCAATATTTGACAGCCTACT
ATGCTAGAGAATGGGGCAACCTCATCGGACAAGGCTTAGAATTGATCACCATTTTAGAAATGATGTCAAACGAAAAGTCA
CAGCTCATGCGAGAGCTTGCCAAGGATATCAAGCAGGGCCTGCTAGCTGGCCAATCCTTTCATCAAAGGGTTGCAGCTTA
TCCCTTTTTTAAAAAGGAGCTGAGCCTAATGATTGAATATGGCGACATCAAATCAAAGCTTGGTCGGGAGCTAGATATCT
ATGCCCAAGAAAGCTGGGAGACCTTTTTTAGTCAGCTCAATCGGGCAACACAATGGATCCAGCCGATTATTTTTTTAGTG
GTTGCTGTGGTTATTGTGATGATTTATGCTGCTATTTTATTACCAATTTATCAACATATGGGAGATGTTTTTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (215-335)

• Type II secretion system (T2SS), protein F (T2SSF) (29-147)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	54.572	98.547	0.538
comYB	Streptococcus mutans UA159	54.572	98.547	0.538
comYB	Streptococcus gordonii str. Challis substr. CH1	52.647	98.837	0.52
comGB/cglB	Streptococcus mitis SK321	48.649	96.802	0.471
comGB/cglB	Streptococcus mitis NCTC 12261	48.503	97.093	0.471
comGB/cglB	Streptococcus pneumoniae Rx1	48.348	96.802	0.468
comGB/cglB	Streptococcus pneumoniae D39	48.348	96.802	0.468
comGB/cglB	Streptococcus pneumoniae R6	48.348	96.802	0.468
comGB/cglB	Streptococcus pneumoniae TIGR4	48.348	96.802	0.468
comGB	Lactococcus lactis subsp. cremoris KW2	46.313	98.547	0.456