Detailed information NTG0506282

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: I2432_RS00775
• Genome accession: NZ_CP065054
• Coordinates: 131172..131606 (+)
• Length: 144 a.a.
• NCBI ID: WP_012677237.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain SEZ13
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 126172..136606

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I2432_RS00745 (LJFMMFNO_00148)	-	127478..128125 (+)	648	WP_206158896.1	ATP-binding cassette domain-containing protein	-
I2432_RS00750 (LJFMMFNO_00149)	comGA/cglA	128306..129244 (+)	939	WP_206158897.1	competence type IV pilus ATPase ComGA	Machinery gene
I2432_RS00755 (LJFMMFNO_00150)	comYB	129177..130211 (+)	1035	WP_249093266.1	competence type IV pilus assembly protein ComGB	Machinery gene
I2432_RS00760 (LJFMMFNO_00151)	comGC/cglC	130212..130535 (+)	324	WP_206158899.1	competence type IV pilus major pilin ComGC	Machinery gene
I2432_RS00765 (LJFMMFNO_00152)	comGD	130513..130938 (+)	426	WP_012514783.1	competence type IV pilus minor pilin ComGD	-
I2432_RS00770 (LJFMMFNO_00153)	comGE	130895..131185 (+)	291	WP_206158900.1	competence type IV pilus minor pilin ComGE	-
I2432_RS00775 (LJFMMFNO_00154)	comYF	131172..131606 (+)	435	WP_012677237.1	competence type IV pilus minor pilin ComGF	Machinery gene
I2432_RS00780 (LJFMMFNO_00155)	comGG	131584..131946 (+)	363	WP_206152302.1	competence type IV pilus minor pilin ComGG	-
I2432_RS00785 (LJFMMFNO_00156)	comYH	132008..132961 (+)	954	WP_037580627.1	class I SAM-dependent methyltransferase	Machinery gene
I2432_RS00790 (LJFMMFNO_00157)	-	133021..134220 (+)	1200	WP_165627047.1	acetate kinase	-
I2432_RS00795 (LJFMMFNO_00158)	-	134831..135013 (-)	183	WP_206158901.1	class IIb bacteriocin, lactobin A/cerein 7B family	-
I2432_RS00800 (LJFMMFNO_00159)	-	135031..135282 (-)	252	WP_206158902.1	bacteriocin class II family protein	-

Sequence

Protein

• Length: 144 a.a.
• Molecular weight: 16155.70 Da
• Isoelectric Point: 10.1988

>NTDB_id=506282 I2432_RS00775 WP_012677237.1 131172..131606(+) (comYF) [Streptococcus equi subsp. zooepidemicus strain SEZ13]
MKDSRLKAFTLIECLIALLVISGSLLVYQALTKSLMVSERYLAANDQDNWLLFSQQLRAELSGTTLQGVSNNRLYVEKDK
KTLSFGQVKSHDFRKAAGNGRGYQPMLFGLSSSQITAVGQQVIIKLKWQSGLERTFIYAFQEKG

Nucleotide

• Length: 435 bp

>NTDB_id=506282 I2432_RS00775 WP_012677237.1 131172..131606(+) (comYF) [Streptococcus equi subsp. zooepidemicus strain SEZ13]
TTGAAAGACAGTAGGTTAAAGGCTTTCACCTTGATAGAGTGCCTTATTGCCTTGCTTGTCATCTCAGGCTCTTTATTAGT
TTATCAGGCCTTAACCAAGAGCCTTATGGTGAGTGAGAGGTATCTAGCAGCAAATGATCAGGACAACTGGCTTTTGTTTT
CCCAGCAATTGCGAGCAGAGCTTTCAGGTACTACCTTACAGGGTGTCTCCAATAATAGGCTATATGTTGAGAAAGACAAG
AAAACTCTGTCCTTTGGACAGGTCAAAAGCCATGATTTTAGAAAAGCAGCTGGCAATGGTCGAGGCTATCAGCCCATGCT
GTTTGGCTTGTCAAGTAGCCAAATAACAGCAGTAGGTCAGCAGGTTATCATCAAGCTGAAGTGGCAAAGCGGCTTAGAAA
GGACCTTTATTTATGCATTTCAAGAGAAGGGTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (41-133)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	52.083	100	0.521
comYF	Streptococcus mutans UA159	51.389	100	0.514
comGF/cglF	Streptococcus mitis SK321	50.365	95.139	0.479
comGF/cglF	Streptococcus mitis NCTC 12261	49.635	95.139	0.472
comGF	Lactococcus lactis subsp. cremoris KW2	47.143	97.222	0.458
comGF/cglF	Streptococcus pneumoniae D39	48.175	95.139	0.458
comGF/cglF	Streptococcus pneumoniae R6	48.175	95.139	0.458
comGF/cglF	Streptococcus pneumoniae TIGR4	48.175	95.139	0.458
comGF/cglF	Streptococcus pneumoniae Rx1	48.175	95.139	0.458