Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   JGX27_RS00955 Genome accession   NZ_CP077423
Coordinates   153499..154767 (-) Length   422 a.a.
NCBI ID   WP_009853279.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus TX20005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 148499..159767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGX27_RS00925 (JGX27_00925) - 149955..150986 (+) 1032 WP_009853276.1 aldose epimerase family protein -
  JGX27_RS00930 (JGX27_00930) - 151203..151427 (+) 225 WP_003063003.1 DUF4649 family protein -
  JGX27_RS00935 (JGX27_00935) - 151485..152066 (-) 582 WP_009853277.1 NAD(P)H-dependent oxidoreductase -
  JGX27_RS00940 (JGX27_00940) - 152240..152974 (+) 735 WP_009853278.1 alpha/beta fold hydrolase -
  JGX27_RS00955 (JGX27_00955) rarA 153499..154767 (-) 1269 WP_009853279.1 replication-associated recombination protein A Machinery gene
  JGX27_RS00960 (JGX27_00960) - 154757..155251 (-) 495 WP_009853280.1 GNAT family N-acetyltransferase -
  JGX27_RS00965 (JGX27_00965) - 155315..155785 (+) 471 WP_009853281.1 DUF3013 family protein -
  JGX27_RS00970 (JGX27_00970) - 155980..156453 (+) 474 WP_009853282.1 GNAT family N-acetyltransferase -
  JGX27_RS00975 (JGX27_00975) prmA 156516..157469 (+) 954 WP_009853283.1 50S ribosomal protein L11 methyltransferase -
  JGX27_RS00980 (JGX27_00980) - 157470..158213 (+) 744 WP_009853284.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  JGX27_RS00985 (JGX27_00985) - 158376..159392 (+) 1017 WP_009853285.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46491.73 Da        Isoelectric Point: 6.1918

>NTDB_id=506282 JGX27_RS00955 WP_009853279.1 153499..154767(-) (rarA) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
MPNNLALRMRPKNIDQVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATTDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSTDDIKTALQ
TALSDKERGFDFDVDIDADALDFIATTTNGDLRSAFNSLDLAVMSTKADDNGLRHISLDTVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPDAQIHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAITAIDKAISDLHQNGNLPIPRHLRDGHYAGSKELGNAQGYKYPHDYPEKWVKQQYLPDKLVGKNYFDA
NQTGKYERALGANKERIDELSK

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=506282 JGX27_RS00955 WP_009853279.1 153499..154767(-) (rarA) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
ATGCCAAATAATCTCGCTTTGCGAATGCGCCCTAAGAATATTGACCAAGTGATTGGGCAGAAACATCTAGTCGGTGAAGG
AAAAATCATTCGCCGTATGGTGGAGGCCAATATGCTGTCATCAATGATTCTCTACGGTCCTCCTGGTATCGGGAAGACCT
CAATCGCTAGCGCTATCGCAGGAACAACCAAATACGCTTTTCGGACATTCAACGCTACAACAGACAGCAAAAAGCGCCTG
CAAGAAATTGCCGAGGAAGCTAAATTTTCTGGCGGTTTAGTCTTGCTGCTCGACGAAATTCACCGCTTAGATAAAACCAA
GCAAGATTTCTTGCTACCTTTACTTGAAAATGGCAATATTATCATGATTGGGGCAACAACTGAAAATCCTTTCTTTTCGG
TGACGCCAGCCATTCGCTCAAGGGTACAAATTTTTGAATTAGAACCTTTGTCAACTGATGACATAAAGACAGCTTTGCAA
ACAGCTTTATCTGATAAAGAGCGCGGATTTGACTTTGATGTTGATATTGATGCCGATGCGCTTGATTTCATTGCAACGAC
AACCAACGGCGACCTACGCTCAGCTTTTAATTCGCTTGATTTAGCGGTCATGTCAACCAAAGCAGATGATAACGGGCTGC
GCCACATTAGCCTTGACACCGTTGAAAATAGCTTGCAGCGCAGTTATATTACCATGGATAAAGATGGTGATGGTCACTAT
GATGTGCTGTCAGCTTTGCAAAAATCCATTCGTGGCTCTGATGTCAATGCTAGTCTGCACTACGCTGCTCGTCTGATTGA
AGCTGGTGATTTGCCAAGCCTTGCTCGCAGGCTGACTGTGATTGCTTACGAGGATATTGGGCTTGCTAATCCTGACGCTC
AAATTCATACGGTTACGGCCCTTGATGCTGCCCAAAGAATTGGTTTTCCTGAAGCACGTATCTTAATTGCAAACGTCGTA
ATTGACCTTGCCTTATCACCAAAATCAAATTCTGCCATTACAGCGATTGACAAGGCTATCAGCGACCTTCATCAAAACGG
AAATCTGCCAATTCCACGTCATCTACGCGACGGACATTACGCTGGCAGCAAAGAATTGGGCAACGCACAAGGCTACAAAT
ACCCTCATGATTATCCTGAAAAATGGGTTAAACAGCAGTATTTACCAGATAAGTTAGTCGGAAAAAATTATTTTGATGCT
AACCAAACTGGGAAATACGAGCGTGCCCTCGGTGCTAACAAAGAGCGAATTGATGAACTATCTAAATAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

60.382

99.289

0.6