Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   IPQ37_RS01000 Genome accession   NZ_CP065041
Coordinates   204990..206717 (+) Length   575 a.a.
NCBI ID   WP_411268221.1    Uniprot ID   -
Organism   Photobacterium damselae subsp. damselae strain AS-16-0963-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 199990..211717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPQ37_RS00980 (IPQ37_00980) pilM 202219..203217 (+) 999 WP_069532485.1 type IV pilus biogenesis protein PilM -
  IPQ37_RS00985 (IPQ37_00985) - 203214..203855 (+) 642 WP_068945318.1 PilN domain-containing protein -
  IPQ37_RS00990 (IPQ37_00990) - 203852..204442 (+) 591 WP_068945317.1 type 4a pilus biogenesis protein PilO -
  IPQ37_RS00995 (IPQ37_00995) - 204451..204966 (+) 516 WP_237042574.1 pilus assembly protein PilP -
  IPQ37_RS01000 (IPQ37_01000) pilQ 204990..206717 (+) 1728 WP_411268221.1 type IV pilus secretin PilQ Machinery gene
  IPQ37_RS01005 (IPQ37_01005) aroK 207047..207565 (+) 519 WP_036765246.1 shikimate kinase AroK -
  IPQ37_RS01010 (IPQ37_01010) aroB 207595..208674 (+) 1080 WP_005302661.1 3-dehydroquinate synthase -
  IPQ37_RS01015 (IPQ37_01015) - 208689..210197 (+) 1509 WP_237041258.1 SPOR domain-containing protein -
  IPQ37_RS01020 (IPQ37_01020) dam 210305..211147 (+) 843 WP_065172417.1 adenine-specific DNA-methyltransferase -
  IPQ37_RS01025 (IPQ37_01025) - 211131..211328 (-) 198 WP_036764707.1 DUF2970 domain-containing protein -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 62751.23 Da        Isoelectric Point: 4.9029

>NTDB_id=506128 IPQ37_RS01000 WP_411268221.1 204990..206717(+) (pilQ) [Photobacterium damselae subsp. damselae strain AS-16-0963-3]
MKRMLSVSLGWQRCWVVMLCCWLGLSQAAIAAGMNIVNNQITDLDFKRDNRGRGVLTVQLAKPQSLVDMRRSGKQLHIDI
FDTAIKDDMLYVLDVVDFATVVRSIETFRTEKGSKLILNMAGVFDYDYQLKGSRLEVVLNAQKKKASSTAKAKQGKIDYK
GKPISINFQDVPVRNVLQLVAEYNDFNLVVSDTVQGNVTLRLDDVPWPQVLDIILQSKGLDKRVQGSVVLIAPKSELATN
ERQEMEAKRKEDELASLRSELIQINYAKAGDIADLLLGTKDGVSMLSQRGSLHVDERTNAIIIKDIPESIDSIEEIITAL
DIPVKQVQIEARIVTVDEGDIDELGVRWGVVNQNGSTTIGGSIEGNLANSGLLGDDATVDDFLNVNLGAITPGASSIAFQ
VAKLGDILLDLELSALQAESKAEIISSPRLVTTNKKAAYIEQGTEIPYLEAASSGAVSVDFKKAVLSLMVTPQITPDDKL
VLDLLVTQDKVGETVVTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIYQHQVNNSVRKVPLLGDIPGLGVLFRHKLQEMG
KRELLIFVTPKIITQ

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=506128 IPQ37_RS01000 WP_411268221.1 204990..206717(+) (pilQ) [Photobacterium damselae subsp. damselae strain AS-16-0963-3]
ATGAAAAGGATGTTATCGGTCAGCTTGGGTTGGCAACGTTGTTGGGTAGTTATGTTGTGCTGTTGGCTTGGTCTTTCCCA
AGCTGCCATTGCTGCTGGCATGAATATTGTGAATAACCAAATCACCGACTTAGATTTTAAGCGTGATAACCGTGGACGAG
GCGTGCTCACCGTTCAGTTAGCCAAACCTCAATCTTTGGTTGATATGCGCCGTTCAGGAAAGCAATTACACATCGATATC
TTTGATACCGCGATTAAAGATGACATGTTGTATGTACTCGATGTGGTCGACTTTGCAACTGTTGTTCGTTCGATTGAAAC
ATTTCGCACCGAGAAAGGCAGCAAACTTATTCTCAATATGGCTGGCGTGTTTGATTATGATTACCAATTAAAAGGCTCTC
GTCTTGAAGTTGTTTTGAACGCCCAGAAAAAGAAAGCCAGCAGTACAGCCAAGGCTAAGCAAGGCAAAATTGATTATAAA
GGTAAGCCCATCTCCATTAACTTCCAAGATGTTCCTGTGCGTAACGTGTTGCAGTTGGTTGCCGAATATAATGATTTTAA
TCTCGTGGTTTCCGATACTGTGCAGGGTAATGTGACCTTACGTCTTGATGATGTGCCTTGGCCACAAGTGCTCGATATTA
TTTTGCAATCAAAAGGGTTGGATAAACGAGTTCAAGGTTCTGTGGTACTGATTGCGCCAAAATCTGAGTTGGCAACCAAT
GAGCGTCAAGAGATGGAAGCCAAACGTAAAGAAGATGAGTTAGCTTCGCTTCGTTCGGAGCTGATTCAAATTAATTACGC
TAAAGCAGGAGATATCGCAGACCTTTTACTCGGAACGAAAGATGGAGTCAGTATGCTATCTCAACGCGGATCTTTGCATG
TTGATGAGCGTACTAATGCCATTATCATCAAAGATATCCCTGAGAGTATTGATAGCATTGAAGAGATTATCACGGCACTG
GATATTCCCGTTAAACAGGTTCAGATAGAAGCTCGTATTGTTACTGTTGATGAGGGGGATATTGACGAGTTAGGGGTACG
TTGGGGTGTCGTTAATCAAAACGGTAGTACAACCATTGGTGGCTCAATTGAAGGTAACCTGGCCAATTCGGGCTTATTGG
GTGATGACGCGACTGTTGATGATTTCTTAAATGTAAATTTAGGAGCCATTACTCCAGGGGCATCGAGTATTGCATTTCAG
GTGGCAAAACTGGGCGATATTTTGCTCGATCTTGAATTATCCGCTCTACAGGCAGAATCAAAAGCAGAGATTATTTCTAG
TCCTCGATTAGTGACTACCAATAAAAAAGCGGCCTACATCGAACAAGGTACTGAGATCCCTTATTTAGAAGCGGCGTCCA
GTGGTGCGGTATCGGTAGACTTTAAAAAGGCCGTATTGAGTTTGATGGTCACACCACAAATTACCCCTGATGATAAATTG
GTGCTCGATCTGCTGGTAACGCAAGATAAAGTAGGGGAAACAGTTGTTACCGGAACCGGAGAAGCGGTCGCTATCGATAC
TCAACGAATTGGCACGCAAGTTCTGGTCAATAATGGCGAGACTGTAGTCTTAGGGGGTATCTATCAGCATCAGGTGAATA
ATTCTGTCCGTAAAGTCCCTTTGTTGGGCGATATTCCAGGATTGGGCGTATTGTTCCGTCATAAGCTGCAAGAGATGGGC
AAGCGTGAACTGTTGATTTTCGTTACACCTAAAATTATCACCCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(260-326)

Bacterial type II and III secretion system protein (Secretin)

(415-573)

Secretin and TonB N terminus short domain (STN)

(186-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

61.296

99.304

0.609
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

61.296

99.304

0.609
  pilQ Vibrio campbellii strain DS40M4

61.111

97.043

0.593
  pilQ Legionella pneumophila strain Lp02

42.831

94.609

0.405
  pilQ Legionella pneumophila strain ERS1305867

42.831

94.609

0.405
  pilQ Pseudomonas aeruginosa PAK

41.103

97.739

0.402
  comQ Acinetobacter baylyi ADP1

40.426

98.087

0.397
  pilQ Acinetobacter baumannii strain A118

39.31

100

0.397
  pilQ Acinetobacter baumannii D1279779

39.31

100

0.397