NTDB

Overview

Name	comFC	Type	Machinery gene
Locus tag	I1A55_RS16365	Genome accession	NZ_CP065040
Coordinates	3175325..3176011 (-)	Length	228 a.a.
NCBI ID	WP_026050153.1	Uniprot ID	-
Organism	Bacillus altitudinis strain Ba1449
Function	ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3170325..3181011

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I1A55_RS16330	fliW	3170461..3170895 (-)	435	WP_017368139.1	flagellar assembly protein FliW	-
I1A55_RS16335	-	3170924..3171502 (-)	579	WP_017368140.1	DUF6470 family protein	-
I1A55_RS16340	flgL	3171549..3172460 (-)	912	WP_017368141.1	flagellar hook-associated protein FlgL	-
I1A55_RS16345	flgK	3172469..3173989 (-)	1521	WP_017368142.1	flagellar hook-associated protein FlgK	-
I1A55_RS16350	-	3174005..3174487 (-)	483	WP_008348261.1	flagellar protein FlgN	-
I1A55_RS16355	flgM	3174506..3174769 (-)	264	WP_206114063.1	flagellar biosynthesis anti-sigma factor FlgM	-
I1A55_RS16360	-	3174849..3175268 (-)	420	WP_017357864.1	TIGR03826 family flagellar region protein	-
I1A55_RS16365	comFC	3175325..3176011 (-)	687	WP_026050153.1	amidophosphoribosyltransferase	Machinery gene
I1A55_RS16370	-	3176008..3176301 (-)	294	WP_008348267.1	late competence development ComFB family protein	-
I1A55_RS16375	comFA	3176366..3177745 (-)	1380	WP_026050154.1	DEAD/DEAH box helicase	Machinery gene
I1A55_RS16380	-	3177865..3178707 (-)	843	WP_007499966.1	DegV family protein	-
I1A55_RS16385	degU	3178919..3179608 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
I1A55_RS16390	degS	3179673..3180848 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator

Sequence

Protein

Download Length: 228 a.a. Molecular weight: 26195.68 Da Isoelectric Point: 10.2584

                                >NTDB_id=506118 I1A55_RS16365 WP_026050153.1 3175325..3176011(-) (comFC) [Bacillus altitudinis strain Ba1449]

MICPICESHFVADFTWKSFLLLNEDRLCVACKNHLMKIQGPTCPKCGRAQSNDQLCQDCSRWNKRRDFAEILVMNRSVYA

YNNFMKDILARFKFRGDTALADLFKKDVQSAFKRSFSIKEPVLVPIPLSKERLKERGFNQSMMLASMIGGPILEPLIKVH

QRKQSKKRKNERLHQQNLFQLRQANPIVPNDIILIDDIYTTGATVYHAAKILKEAGAKSVSSFTLIRS

Nucleotide

Download Length: 687 bp

                                >NTDB_id=506118 I1A55_RS16365 WP_026050153.1 3175325..3176011(-) (comFC) [Bacillus altitudinis strain Ba1449]

TTGATTTGTCCAATTTGTGAGAGCCATTTTGTGGCTGATTTTACATGGAAATCATTCCTACTATTAAATGAAGATCGTTT

ATGTGTAGCATGTAAGAACCACCTGATGAAGATTCAAGGTCCTACTTGTCCCAAATGCGGAAGAGCGCAATCAAATGATC

AATTGTGTCAAGATTGTTCAAGGTGGAATAAACGACGGGATTTTGCTGAGATTCTTGTAATGAATCGGTCTGTTTATGCT

TACAACAACTTTATGAAAGATATTCTAGCTCGATTTAAATTTCGAGGTGATACGGCTTTAGCTGATCTATTTAAAAAAGA

TGTACAGTCAGCGTTTAAACGTTCTTTTTCAATCAAAGAACCGGTGCTTGTCCCAATTCCTTTGAGTAAAGAGAGATTAA

AGGAAAGAGGATTCAATCAGTCAATGATGCTTGCTTCCATGATTGGCGGACCTATATTGGAGCCACTTATAAAAGTACAT

CAAAGGAAGCAGTCTAAGAAAAGAAAAAATGAACGTTTACATCAACAGAATTTGTTCCAATTAAGGCAGGCAAACCCGAT

CGTTCCAAACGATATCATATTAATCGATGATATTTATACAACTGGGGCGACAGTCTATCATGCAGCAAAAATTTTAAAAG

AAGCAGGCGCCAAAAGTGTTTCCTCTTTTACGTTGATTCGTAGTTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(3-59)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comFC	Bacillus subtilis subsp. subtilis str. 168	50	100	0.504
comFC/cflB	Streptococcus mitis SK321	39.301	100	0.395
comFC/cflB	Streptococcus mitis NCTC 12261	38.428	100	0.386
comFC/cflB	Streptococcus pneumoniae TIGR4	37.555	100	0.377
comFC/cflB	Streptococcus pneumoniae Rx1	37.555	100	0.377
comFC/cflB	Streptococcus pneumoniae D39	37.555	100	0.377
comFC/cflB	Streptococcus pneumoniae R6	37.555	100	0.377

Detailed information NTG0506118